miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 97352 1.08 0.001005
Target:  5'- cCACAACCACCCGCCCGGGGAGCUCCGg -3'
miRNA:   3'- -GUGUUGGUGGGCGGGCCCCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 115894 0.84 0.057747
Target:  5'- cCGCccCCAuCCCGCCCGGGGGGCUuCCGg -3'
miRNA:   3'- -GUGuuGGU-GGGCGGGCCCCUCGA-GGC- -5'
29064 5' -62.6 NC_006146.1 + 52853 0.83 0.060772
Target:  5'- cCGCcGCC-CCCGCCCGGGG-GCUCCa -3'
miRNA:   3'- -GUGuUGGuGGGCGGGCCCCuCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 44377 0.8 0.103249
Target:  5'- --aGACC-CCCGCCCGGGGGGCguguggggCCGg -3'
miRNA:   3'- gugUUGGuGGGCGGGCCCCUCGa-------GGC- -5'
29064 5' -62.6 NC_006146.1 + 55696 0.77 0.156746
Target:  5'- gCACGGCCG-CCG-CCGGGGGGCUCUGc -3'
miRNA:   3'- -GUGUUGGUgGGCgGGCCCCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 137167 0.76 0.189783
Target:  5'- cCACAcCCACCgGaCCGGaGGAGCUCCa -3'
miRNA:   3'- -GUGUuGGUGGgCgGGCC-CCUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 136980 0.75 0.208497
Target:  5'- cCGCAcCCACCgGaCCGGaGGAGCUCCa -3'
miRNA:   3'- -GUGUuGGUGGgCgGGCC-CCUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 55252 0.75 0.223561
Target:  5'- cCAUGACC-CCCGCCCGGGuGGCggCCa -3'
miRNA:   3'- -GUGUUGGuGGGCGGGCCCcUCGa-GGc -5'
29064 5' -62.6 NC_006146.1 + 127169 0.74 0.25646
Target:  5'- gCGCGACCACCUgGCCCGGGcgGAGgaaaUCCGc -3'
miRNA:   3'- -GUGUUGGUGGG-CGGGCCC--CUCg---AGGC- -5'
29064 5' -62.6 NC_006146.1 + 38822 0.73 0.274348
Target:  5'- uGCAGCCagGCCCugaGCCUGGGGcAGCUCaCGu -3'
miRNA:   3'- gUGUUGG--UGGG---CGGGCCCC-UCGAG-GC- -5'
29064 5' -62.6 NC_006146.1 + 128187 0.73 0.280529
Target:  5'- cCGCGGCUGCCaGCCCgagcgggcgcuGGGGGGCUCUGc -3'
miRNA:   3'- -GUGUUGGUGGgCGGG-----------CCCCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 85592 0.73 0.293221
Target:  5'- gGCAGCCGCCCGCCUcGGaAGCUggcaCCGg -3'
miRNA:   3'- gUGUUGGUGGGCGGGcCCcUCGA----GGC- -5'
29064 5' -62.6 NC_006146.1 + 124135 0.73 0.299734
Target:  5'- -cCAGCCAUCCGCCCGGGGucgggaGGCgaggaCCc -3'
miRNA:   3'- guGUUGGUGGGCGGGCCCC------UCGa----GGc -5'
29064 5' -62.6 NC_006146.1 + 96635 0.73 0.299734
Target:  5'- cCGCAACCggcucuuugGCCaGCCCGGGGAGacggCCGc -3'
miRNA:   3'- -GUGUUGG---------UGGgCGGGCCCCUCga--GGC- -5'
29064 5' -62.6 NC_006146.1 + 70985 0.73 0.306358
Target:  5'- uGCGACCcggaGCCCgcucuugcGCCCGGGGGGCagaggcgCCGg -3'
miRNA:   3'- gUGUUGG----UGGG--------CGGGCCCCUCGa------GGC- -5'
29064 5' -62.6 NC_006146.1 + 131103 0.72 0.31994
Target:  5'- aACGGCCG-CCGUCCcagaagccGGGAGCUCCGg -3'
miRNA:   3'- gUGUUGGUgGGCGGGc-------CCCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 61313 0.72 0.34115
Target:  5'- gCGCGGCguCCUGCCCGGGuGGCcuagCCGg -3'
miRNA:   3'- -GUGUUGguGGGCGGGCCCcUCGa---GGC- -5'
29064 5' -62.6 NC_006146.1 + 263 0.71 0.355846
Target:  5'- gCGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- -GUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 116249 0.71 0.377934
Target:  5'- cUACGACgggGCCCcuccaauGCCCGGGGAGCcaCCGg -3'
miRNA:   3'- -GUGUUGg--UGGG-------CGGGCCCCUCGa-GGC- -5'
29064 5' -62.6 NC_006146.1 + 51811 0.71 0.393694
Target:  5'- gCGCcaAGCCACCCGuucCCCGGGGcggcguggaggggGGCUCgGg -3'
miRNA:   3'- -GUG--UUGGUGGGC---GGGCCCC-------------UCGAGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.