miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 263 0.71 0.355846
Target:  5'- gCGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- -GUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 907 0.68 0.553268
Target:  5'- cCGCGcGCCGCCC-CCCGGGaccccGGGCgcgcgCCGg -3'
miRNA:   3'- -GUGU-UGGUGGGcGGGCCC-----CUCGa----GGC- -5'
29064 5' -62.6 NC_006146.1 + 1195 0.7 0.402543
Target:  5'- aGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- gUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 1839 0.68 0.553268
Target:  5'- cCGCGcGCCGCCC-CCCGGGaccccGGGCgcgcgCCGg -3'
miRNA:   3'- -GUGU-UGGUGGGcGGGCCC-----CUCGa----GGC- -5'
29064 5' -62.6 NC_006146.1 + 2127 0.7 0.402543
Target:  5'- aGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- gUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 2771 0.68 0.553268
Target:  5'- cCGCGcGCCGCCC-CCCGGGaccccGGGCgcgcgCCGg -3'
miRNA:   3'- -GUGU-UGGUGGGcGGGCCC-----CUCGa----GGC- -5'
29064 5' -62.6 NC_006146.1 + 3059 0.7 0.402543
Target:  5'- aGCGcCCACCCGUgagGGGGAGC-CCGg -3'
miRNA:   3'- gUGUuGGUGGGCGgg-CCCCUCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 3443 0.68 0.543817
Target:  5'- gCugGGCUccacgguCCCGCUCGGGGGGCUa-- -3'
miRNA:   3'- -GugUUGGu------GGGCGGGCCCCUCGAggc -5'
29064 5' -62.6 NC_006146.1 + 3703 0.68 0.553268
Target:  5'- cCGCGcGCCGCCC-CCCGGGaccccGGGCgcgcgCCGg -3'
miRNA:   3'- -GUGU-UGGUGGGcGGGCCC-----CUCGa----GGC- -5'
29064 5' -62.6 NC_006146.1 + 12937 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 13175 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 13543 0.69 0.497452
Target:  5'- aGCAGCCccguccccGCCCGCCCGGccaGAGaCUCUc -3'
miRNA:   3'- gUGUUGG--------UGGGCGGGCCc--CUC-GAGGc -5'
29064 5' -62.6 NC_006146.1 + 16014 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 16253 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 16621 0.69 0.497452
Target:  5'- aGCAGCCccguccccGCCCGCCCGGccaGAGaCUCUc -3'
miRNA:   3'- gUGUUGG--------UGGGCGGGCCc--CUC-GAGGc -5'
29064 5' -62.6 NC_006146.1 + 17488 0.67 0.610805
Target:  5'- -cCAGCCacACCCGCCCccGGGAaCUCCc -3'
miRNA:   3'- guGUUGG--UGGGCGGGc-CCCUcGAGGc -5'
29064 5' -62.6 NC_006146.1 + 17709 0.68 0.534419
Target:  5'- gGCGGCCAagCGCCUGGGGGacguaauCUCCGu -3'
miRNA:   3'- gUGUUGGUggGCGGGCCCCUc------GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 19092 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 19331 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 19699 0.69 0.497452
Target:  5'- aGCAGCCccguccccGCCCGCCCGGccaGAGaCUCUc -3'
miRNA:   3'- gUGUUGG--------UGGGCGGGCCc--CUC-GAGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.