miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 22170 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 22409 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 22777 0.69 0.497452
Target:  5'- aGCAGCCccguccccGCCCGCCCGGccaGAGaCUCUc -3'
miRNA:   3'- gUGUUGG--------UGGGCGGGCCc--CUC-GAGGc -5'
29064 5' -62.6 NC_006146.1 + 24230 0.69 0.497452
Target:  5'- cCGgGGCCGCCCaccGCCCGGGaGGGUuguuuUCUGa -3'
miRNA:   3'- -GUgUUGGUGGG---CGGGCCC-CUCG-----AGGC- -5'
29064 5' -62.6 NC_006146.1 + 24689 0.66 0.65919
Target:  5'- cCAUGGCCGCCgCuuacCCCGGaGGAGC-CCa -3'
miRNA:   3'- -GUGUUGGUGG-Gc---GGGCC-CCUCGaGGc -5'
29064 5' -62.6 NC_006146.1 + 25248 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 25487 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 25855 0.69 0.497452
Target:  5'- aGCAGCCccguccccGCCCGCCCGGccaGAGaCUCUc -3'
miRNA:   3'- gUGUUGG--------UGGGCGGGCCc--CUC-GAGGc -5'
29064 5' -62.6 NC_006146.1 + 25867 0.69 0.476721
Target:  5'- gCGCGcUCACgCUGCCCGGGaacauugugguggaGAGCUCCu -3'
miRNA:   3'- -GUGUuGGUG-GGCGGGCCC--------------CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 28326 0.66 0.65919
Target:  5'- --aGGCCcuggcCCCGCCCgguggccuuGGGGuAGCUCUGg -3'
miRNA:   3'- gugUUGGu----GGGCGGG---------CCCC-UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 28565 0.66 0.65919
Target:  5'- -cCGGCCugcccgGCCUGCCCGGccucGCUCCGg -3'
miRNA:   3'- guGUUGG------UGGGCGGGCCccu-CGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 28933 0.69 0.487485
Target:  5'- aGCAGCCccgccccGCCCGCCCGGccaGAGaCUCUc -3'
miRNA:   3'- gUGUUGG-------UGGGCGGGCCc--CUC-GAGGc -5'
29064 5' -62.6 NC_006146.1 + 31746 0.68 0.543817
Target:  5'- uCACAGgCGCCCcCCCGGGGgacgggAGCccCCGu -3'
miRNA:   3'- -GUGUUgGUGGGcGGGCCCC------UCGa-GGC- -5'
29064 5' -62.6 NC_006146.1 + 33017 0.69 0.497452
Target:  5'- cCACGgggACCcccuGCCgGCCCGGGGcggGGC-CCGg -3'
miRNA:   3'- -GUGU---UGG----UGGgCGGGCCCC---UCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 33179 0.66 0.668837
Target:  5'- cCAgAACCggguagGCCCGggcaccCCCGGGGGGaggCCGg -3'
miRNA:   3'- -GUgUUGG------UGGGC------GGGCCCCUCga-GGC- -5'
29064 5' -62.6 NC_006146.1 + 33302 0.7 0.402543
Target:  5'- cCGCugcGCCG-CCGCUCGGuccuGGGGCUCCGg -3'
miRNA:   3'- -GUGu--UGGUgGGCGGGCC----CCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 33304 0.67 0.610805
Target:  5'- cCAgGGgCACCCGgccCCCGGcccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc--CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33396 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 33424 0.7 0.402543
Target:  5'- cCGCugcGCCG-CCGCUCGGuccuGGGGCUCCGg -3'
miRNA:   3'- -GUGu--UGGUgGGCGGGCC----CCUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 33489 0.66 0.649524
Target:  5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3'
miRNA:   3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.