Results 1 - 20 of 158 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 97352 | 1.08 | 0.001005 |
Target: 5'- cCACAACCACCCGCCCGGGGAGCUCCGg -3' miRNA: 3'- -GUGUUGGUGGGCGGGCCCCUCGAGGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 169226 | 0.7 | 0.41895 |
Target: 5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3' miRNA: 3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 127665 | 0.7 | 0.427304 |
Target: 5'- gGCuAUCugCUGCuCCaGGGGGGCUCCu -3' miRNA: 3'- gUGuUGGugGGCG-GG-CCCCUCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 68112 | 0.66 | 0.668837 |
Target: 5'- gGCGGCCAgCCgGUCCGcGGuGAGCggcgCCa -3' miRNA: 3'- gUGUUGGU-GGgCGGGC-CC-CUCGa---GGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 127169 | 0.74 | 0.25646 |
Target: 5'- gCGCGACCACCUgGCCCGGGcgGAGgaaaUCCGc -3' miRNA: 3'- -GUGUUGGUGGG-CGGGCCC--CUCg---AGGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 38822 | 0.73 | 0.274348 |
Target: 5'- uGCAGCCagGCCCugaGCCUGGGGcAGCUCaCGu -3' miRNA: 3'- gUGUUGG--UGGG---CGGGCCCC-UCGAG-GC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 96635 | 0.73 | 0.299734 |
Target: 5'- cCGCAACCggcucuuugGCCaGCCCGGGGAGacggCCGc -3' miRNA: 3'- -GUGUUGG---------UGGgCGGGCCCCUCga--GGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 131103 | 0.72 | 0.31994 |
Target: 5'- aACGGCCG-CCGUCCcagaagccGGGAGCUCCGg -3' miRNA: 3'- gUGUUGGUgGGCGGGc-------CCCUCGAGGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 156798 | 0.71 | 0.394494 |
Target: 5'- aGCAGCCccgacauCCCGCCCuGGGGA-CUCUa -3' miRNA: 3'- gUGUUGGu------GGGCGGG-CCCCUcGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 168294 | 0.7 | 0.41895 |
Target: 5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3' miRNA: 3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 33302 | 0.7 | 0.402543 |
Target: 5'- cCGCugcGCCG-CCGCUCGGuccuGGGGCUCCGg -3' miRNA: 3'- -GUGu--UGGUgGGCGGGCC----CCUCGAGGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 45964 | 0.71 | 0.394494 |
Target: 5'- gAC-GCUcUCUGCCCGGGGcAGCUCCu -3' miRNA: 3'- gUGuUGGuGGGCGGGCCCC-UCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 52853 | 0.83 | 0.060772 |
Target: 5'- cCGCcGCC-CCCGCCCGGGG-GCUCCa -3' miRNA: 3'- -GUGuUGGuGGGCGGGCCCCuCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 33424 | 0.7 | 0.402543 |
Target: 5'- cCGCugcGCCG-CCGCUCGGuccuGGGGCUCCGg -3' miRNA: 3'- -GUGu--UGGUgGGCGGGCC----CCUCGAGGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 44377 | 0.8 | 0.103249 |
Target: 5'- --aGACC-CCCGCCCGGGGGGCguguggggCCGg -3' miRNA: 3'- gugUUGGuGGGCGGGCCCCUCGa-------GGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 51811 | 0.71 | 0.393694 |
Target: 5'- gCGCcaAGCCACCCGuucCCCGGGGcggcguggaggggGGCUCgGg -3' miRNA: 3'- -GUG--UUGGUGGGC---GGGCCCC-------------UCGAGgC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 167362 | 0.7 | 0.41895 |
Target: 5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3' miRNA: 3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 170157 | 0.7 | 0.41895 |
Target: 5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3' miRNA: 3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 55696 | 0.77 | 0.156746 |
Target: 5'- gCACGGCCG-CCG-CCGGGGGGCUCUGc -3' miRNA: 3'- -GUGUUGGUgGGCgGGCCCCUCGAGGC- -5' |
|||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 85592 | 0.73 | 0.293221 |
Target: 5'- gGCAGCCGCCCGCCUcGGaAGCUggcaCCGg -3' miRNA: 3'- gUGUUGGUGGGCGGGcCCcUCGA----GGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home