Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29064 | 5' | -62.6 | NC_006146.1 | + | 68112 | 0.66 | 0.668837 |
Target: 5'- gGCGGCCAgCCgGUCCGcGGuGAGCggcgCCa -3' miRNA: 3'- gUGUUGGU-GGgCGGGC-CC-CUCGa---GGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35254 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35161 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35068 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 34975 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 34883 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 34790 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 34697 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 34604 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35347 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35440 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35533 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 124180 | 0.66 | 0.668837 |
Target: 5'- gGCcuCCGCCCGCCUc-GGAGCcgCCGc -3' miRNA: 3'- gUGuuGGUGGGCGGGccCCUCGa-GGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 33179 | 0.66 | 0.668837 |
Target: 5'- cCAgAACCggguagGCCCGggcaccCCCGGGGGGaggCCGg -3' miRNA: 3'- -GUgUUGG------UGGGC------GGGCCCCUCga-GGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 116187 | 0.66 | 0.665945 |
Target: 5'- -uCGGCCGCCCuGaCCCGGGcccgccguccccucGAGCUCa- -3' miRNA: 3'- guGUUGGUGGG-C-GGGCCC--------------CUCGAGgc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 24689 | 0.66 | 0.65919 |
Target: 5'- cCAUGGCCGCCgCuuacCCCGGaGGAGC-CCa -3' miRNA: 3'- -GUGUUGGUGG-Gc---GGGCC-CCUCGaGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 114518 | 0.66 | 0.649524 |
Target: 5'- aGCGGCCACgCuuaCCCGGcGGcgguGCUCCGc -3' miRNA: 3'- gUGUUGGUGgGc--GGGCC-CCu---CGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 102804 | 0.66 | 0.649524 |
Target: 5'- gGCuGGCCGCCCaCCUGgaucgcgcGGGGGCUCUGc -3' miRNA: 3'- gUG-UUGGUGGGcGGGC--------CCCUCGAGGC- -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35719 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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29064 | 5' | -62.6 | NC_006146.1 | + | 35626 | 0.66 | 0.649524 |
Target: 5'- cCAgGGgCACCCGgccCCCGGccccGAGCUCCa -3' miRNA: 3'- -GUgUUgGUGGGC---GGGCCc---CUCGAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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