miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29064 5' -62.6 NC_006146.1 + 170157 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 169226 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 168294 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 167362 0.7 0.41895
Target:  5'- gCGCGGCgGCgCCGgCCGGGGgcugagggGGCUCCc -3'
miRNA:   3'- -GUGUUGgUG-GGCgGGCCCC--------UCGAGGc -5'
29064 5' -62.6 NC_006146.1 + 165981 0.69 0.461676
Target:  5'- gCACGGCCACCCGaCagCGaGGGuccGGCUCUGu -3'
miRNA:   3'- -GUGUUGGUGGGC-Gg-GC-CCC---UCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 157448 0.69 0.488387
Target:  5'- uGgGGCCACCCGggcugCCGGGGuccCUCCGg -3'
miRNA:   3'- gUgUUGGUGGGCg----GGCCCCuc-GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 156798 0.71 0.394494
Target:  5'- aGCAGCCccgacauCCCGCCCuGGGGA-CUCUa -3'
miRNA:   3'- gUGUUGGu------GGGCGGG-CCCCUcGAGGc -5'
29064 5' -62.6 NC_006146.1 + 154370 0.69 0.488387
Target:  5'- uGgGGCCACCCGggcugCCGGGGuccCUCCGg -3'
miRNA:   3'- gUgUUGGUGGGCg----GGCCCCuc-GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 151292 0.69 0.488387
Target:  5'- uGgGGCCACCCGggcugCCGGGGuccCUCCGg -3'
miRNA:   3'- gUgUUGGUGGGCg----GGCCCCuc-GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 150423 0.67 0.571355
Target:  5'- gGCAaaguccACCACCaGCaCCGGGGAGUUguagaagCCGg -3'
miRNA:   3'- gUGU------UGGUGGgCG-GGCCCCUCGA-------GGC- -5'
29064 5' -62.6 NC_006146.1 + 148214 0.69 0.488387
Target:  5'- uGgGGCCACCCGggcugCCGGGGuccCUCCGg -3'
miRNA:   3'- gUgUUGGUGGGCg----GGCCCCuc-GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 146941 0.69 0.470496
Target:  5'- gGCucccCCACCCGaCCCGGGGGGaaagUCGc -3'
miRNA:   3'- gUGuu--GGUGGGC-GGGCCCCUCga--GGC- -5'
29064 5' -62.6 NC_006146.1 + 145136 0.69 0.488387
Target:  5'- uGgGGCCACCCGggcugCCGGGGuccCUCCGg -3'
miRNA:   3'- gUgUUGGUGGGCg----GGCCCCuc-GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 142672 0.66 0.65919
Target:  5'- uCGCAGCCACCUGCCCuccggcugGGucGGAcGgUCUGg -3'
miRNA:   3'- -GUGUUGGUGGGCGGG--------CC--CCU-CgAGGC- -5'
29064 5' -62.6 NC_006146.1 + 142058 0.69 0.488387
Target:  5'- uGgGGCCACCCGggcugCCGGGGuccCUCCGg -3'
miRNA:   3'- gUgUUGGUGGGCg----GGCCCCuc-GAGGC- -5'
29064 5' -62.6 NC_006146.1 + 139064 0.66 0.630162
Target:  5'- gGCGGCCACCauacggGCCCugguggcgcGGGGGGCUgUa -3'
miRNA:   3'- gUGUUGGUGGg-----CGGG---------CCCCUCGAgGc -5'
29064 5' -62.6 NC_006146.1 + 138765 0.66 0.638877
Target:  5'- cCACGGCCcuggcuaACCUGCuacgugCUGGGaGAGCUUCGg -3'
miRNA:   3'- -GUGUUGG-------UGGGCG------GGCCC-CUCGAGGC- -5'
29064 5' -62.6 NC_006146.1 + 138045 0.67 0.620479
Target:  5'- uCGC-GCCGCCCGCUUcauggGGGGGGaggCCGc -3'
miRNA:   3'- -GUGuUGGUGGGCGGG-----CCCCUCga-GGC- -5'
29064 5' -62.6 NC_006146.1 + 137969 0.68 0.543817
Target:  5'- uCGCGGCCggGCCU-CCCGGGG-GC-CCGg -3'
miRNA:   3'- -GUGUUGG--UGGGcGGGCCCCuCGaGGC- -5'
29064 5' -62.6 NC_006146.1 + 137708 0.69 0.452945
Target:  5'- -cCGGCCuCCC-CCCGGGGuGC-CCGg -3'
miRNA:   3'- guGUUGGuGGGcGGGCCCCuCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.