miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 26990 0.71 0.672378
Target:  5'- gGGCCcaGGGGGgUUCGCGUUGCCAggCCa -3'
miRNA:   3'- -UCGG--CCUCCaAGGUGCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 27630 0.67 0.862352
Target:  5'- uGGCCagGGAaGUUCCgggccaGCGUCACCGggCCa -3'
miRNA:   3'- -UCGG--CCUcCAAGG------UGCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 28144 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 28835 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 29122 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 29236 0.69 0.778666
Target:  5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3'
miRNA:   3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 30204 0.67 0.87689
Target:  5'- cAGCCaGAGGgccgCUGCGCCcGCCGggCUg -3'
miRNA:   3'- -UCGGcCUCCaa--GGUGCGG-UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 33119 0.67 0.862352
Target:  5'- cGCCGGcGGGUucgCCGgGCCGCUGccCCg -3'
miRNA:   3'- uCGGCC-UCCAa--GGUgCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 33168 0.7 0.702227
Target:  5'- cGGCUGGGcaccgCCGCGCCGCCGcucggUCCu -3'
miRNA:   3'- -UCGGCCUccaa-GGUGCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 33243 0.67 0.862352
Target:  5'- cGCCGGcGGGUccgCCGgGCCGCUGccCCg -3'
miRNA:   3'- uCGGCC-UCCAa--GGUgCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 33246 0.66 0.909463
Target:  5'- -uCCGGGGGUgggggcUCCACGaacCCGCUugccUUCCa -3'
miRNA:   3'- ucGGCCUCCA------AGGUGC---GGUGGu---AAGG- -5'
29065 3' -56.7 NC_006146.1 + 33277 0.68 0.825945
Target:  5'- gGGUgGGGGGUggCCcggcugggcaccgcuGCGCCGCCGcucggUCCu -3'
miRNA:   3'- -UCGgCCUCCAa-GG---------------UGCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 33365 0.67 0.84701
Target:  5'- cGCCGGuGGgUCCGCcggGCCGCUGccCCg -3'
miRNA:   3'- uCGGCCuCCaAGGUG---CGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 33399 0.68 0.825945
Target:  5'- gGGUgGGGGGUggCCcgccugggcaccgcuGCGCCGCCGcucggUCCu -3'
miRNA:   3'- -UCGgCCUCCAa-GG---------------UGCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 33571 0.7 0.741184
Target:  5'- -uCCGGGGGUcgCCGCGuUCGCUggUCCg -3'
miRNA:   3'- ucGGCCUCCAa-GGUGC-GGUGGuaAGG- -5'
29065 3' -56.7 NC_006146.1 + 34059 0.7 0.731561
Target:  5'- cGGCCGGGGGUcCCGUGgCACgGggCCg -3'
miRNA:   3'- -UCGGCCUCCAaGGUGCgGUGgUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 34567 0.69 0.760144
Target:  5'- gAGggGGAGGUUCUGCGCC-CCGUUauaCCu -3'
miRNA:   3'- -UCggCCUCCAAGGUGCGGuGGUAA---GG- -5'
29065 3' -56.7 NC_006146.1 + 36655 0.7 0.702227
Target:  5'- aGGCgCGGGGGUUCUcugaggcuacauGgGCCugCAgUCCa -3'
miRNA:   3'- -UCG-GCCUCCAAGG------------UgCGGugGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 41771 0.66 0.909463
Target:  5'- cGCCGGAGGccCUGCGCC-CgGgcgCCc -3'
miRNA:   3'- uCGGCCUCCaaGGUGCGGuGgUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 42621 0.7 0.731561
Target:  5'- aAGCCuGGGGcUCgGcCGCCGCCGUgggCCu -3'
miRNA:   3'- -UCGGcCUCCaAGgU-GCGGUGGUAa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.