Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29065 | 3' | -56.7 | NC_006146.1 | + | 16811 | 0.66 | 0.907667 |
Target: 5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3' miRNA: 3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 16925 | 0.69 | 0.778666 |
Target: 5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3' miRNA: 3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 17757 | 0.71 | 0.672378 |
Target: 5'- gGGCCcaGGGGGgUUCGCGUUGCCAggCCa -3' miRNA: 3'- -UCGG--CCUCCaAGGUGCGGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 18911 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 19601 | 0.66 | 0.90585 |
Target: 5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3' miRNA: 3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 19889 | 0.66 | 0.907667 |
Target: 5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3' miRNA: 3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 20002 | 0.69 | 0.778666 |
Target: 5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3' miRNA: 3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 20731 | 0.67 | 0.84701 |
Target: 5'- cGGCCuGcGAGGacCCGCGCCaaaagACCAU-CCu -3' miRNA: 3'- -UCGG-C-CUCCaaGGUGCGG-----UGGUAaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 20835 | 0.71 | 0.672378 |
Target: 5'- gGGCCcaGGGGGgUUCGCGUUGCCAggCCa -3' miRNA: 3'- -UCGG--CCUCCaAGGUGCGGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 21988 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 22679 | 0.66 | 0.90585 |
Target: 5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3' miRNA: 3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 22966 | 0.66 | 0.907667 |
Target: 5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3' miRNA: 3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 23080 | 0.69 | 0.778666 |
Target: 5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3' miRNA: 3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 23422 | 0.67 | 0.883844 |
Target: 5'- uGCCGGAGGggcaguaCCACaagcuccgGCUGCCcgUCUc -3' miRNA: 3'- uCGGCCUCCaa-----GGUG--------CGGUGGuaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 23913 | 0.71 | 0.672378 |
Target: 5'- gGGCCcaGGGGGgUUCGCGUUGCCAggCCa -3' miRNA: 3'- -UCGG--CCUCCaAGGUGCGGUGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 24706 | 0.66 | 0.915303 |
Target: 5'- -cCCGGAGGagcCCAUGCagCACUAgcgUCCa -3' miRNA: 3'- ucGGCCUCCaa-GGUGCG--GUGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 25066 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 25757 | 0.66 | 0.90585 |
Target: 5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3' miRNA: 3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 26044 | 0.66 | 0.907667 |
Target: 5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3' miRNA: 3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 26158 | 0.69 | 0.778666 |
Target: 5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3' miRNA: 3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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