Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29065 | 3' | -56.7 | NC_006146.1 | + | 137176 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 137136 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 137083 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 137043 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136990 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136950 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136897 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136857 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136804 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136764 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136712 | 0.72 | 0.622099 |
Target: 5'- cGGCgGGGGGUggCCGgcCGCUGCCGggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGU--GCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136672 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136619 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136579 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136526 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136486 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136433 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136393 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136340 | 0.71 | 0.642241 |
Target: 5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3' miRNA: 3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 136300 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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