miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 170092 0.7 0.721855
Target:  5'- cGGCgGGAGGggCCgGCGCCGCagggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGUGguaa----GG- -5'
29065 3' -56.7 NC_006146.1 + 169160 0.73 0.552195
Target:  5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5'
29065 3' -56.7 NC_006146.1 + 168257 0.66 0.890582
Target:  5'- gGGCUGGAuGGUcCC-CGCCguguggacgaaGCCGUgcUCCa -3'
miRNA:   3'- -UCGGCCU-CCAaGGuGCGG-----------UGGUA--AGG- -5'
29065 3' -56.7 NC_006146.1 + 168228 0.73 0.552195
Target:  5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5'
29065 3' -56.7 NC_006146.1 + 167296 0.73 0.552195
Target:  5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5'
29065 3' -56.7 NC_006146.1 + 150781 0.68 0.830913
Target:  5'- uGGCCcccaGcAGGUgCCGgGCCACCGUgUCCa -3'
miRNA:   3'- -UCGGc---C-UCCAaGGUgCGGUGGUA-AGG- -5'
29065 3' -56.7 NC_006146.1 + 146852 0.68 0.805473
Target:  5'- gGGCCuGGcucGGggCCGCGUCACCccgCCa -3'
miRNA:   3'- -UCGG-CCu--CCaaGGUGCGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 141492 0.66 0.909463
Target:  5'- uGCUGGAGGUcugCCACuuGCCuugaGCCuaAUUCUg -3'
miRNA:   3'- uCGGCCUCCAa--GGUG--CGG----UGG--UAAGG- -5'
29065 3' -56.7 NC_006146.1 + 138472 0.73 0.571994
Target:  5'- -cCUGGAGGUaUCCuaACGCCGCCccuauAUUCCa -3'
miRNA:   3'- ucGGCCUCCA-AGG--UGCGGUGG-----UAAGG- -5'
29065 3' -56.7 NC_006146.1 + 137913 0.75 0.454456
Target:  5'- gGGCCGGGGGUUCCGggggcaGCCGcgacccagcgcgccCCGUUCa -3'
miRNA:   3'- -UCGGCCUCCAAGGUg-----CGGU--------------GGUAAGg -5'
29065 3' -56.7 NC_006146.1 + 137773 0.67 0.883844
Target:  5'- uGGuCCGGuccGGGUgggCCugGuCCGCCGgaUCCg -3'
miRNA:   3'- -UC-GGCC---UCCAa--GGugC-GGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 137600 0.66 0.903395
Target:  5'- gGGCCGGGGG--CCGggUGCC-CCugggUCCg -3'
miRNA:   3'- -UCGGCCUCCaaGGU--GCGGuGGua--AGG- -5'
29065 3' -56.7 NC_006146.1 + 137548 0.71 0.642241
Target:  5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3'
miRNA:   3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 137508 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 137455 0.71 0.642241
Target:  5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3'
miRNA:   3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 137415 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 137362 0.71 0.642241
Target:  5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3'
miRNA:   3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 137322 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 137269 0.71 0.642241
Target:  5'- cGGCgGGGGGUggCCGgGCCGCUgccgggUCCg -3'
miRNA:   3'- -UCGgCCUCCAa-GGUgCGGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 137229 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.