miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 15833 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 12754 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 18911 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 136672 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136114 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136486 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136393 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136300 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136207 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136579 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 136021 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135278 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135371 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135464 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135557 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135650 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135742 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135835 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135928 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 135185 0.72 0.613041
Target:  5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3'
miRNA:   3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.