miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 19601 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 70673 0.66 0.90585
Target:  5'- cAGCgGGAGGUgaugaucacucaggCCACggGCCGCCuggugUCUc -3'
miRNA:   3'- -UCGgCCUCCAa-------------GGUG--CGGUGGua---AGG- -5'
29065 3' -56.7 NC_006146.1 + 28835 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 127252 0.66 0.903395
Target:  5'- gAGCCGGgccccucuccccAGGcggCCACGCCccGCCGcccacucccucUUCCc -3'
miRNA:   3'- -UCGGCC------------UCCaa-GGUGCGG--UGGU-----------AAGG- -5'
29065 3' -56.7 NC_006146.1 + 137600 0.66 0.903395
Target:  5'- gGGCCGGGGG--CCGggUGCC-CCugggUCCg -3'
miRNA:   3'- -UCGGCCUCCaaGGU--GCGGuGGua--AGG- -5'
29065 3' -56.7 NC_006146.1 + 86517 0.66 0.903395
Target:  5'- -aCCGGAGG--CCAUgaugGCCGCCcggUCCa -3'
miRNA:   3'- ucGGCCUCCaaGGUG----CGGUGGua-AGG- -5'
29065 3' -56.7 NC_006146.1 + 72031 0.66 0.89774
Target:  5'- gAGUgGGuGGUgacucggcgcaggcaCCcCGCCGCCAUUCUu -3'
miRNA:   3'- -UCGgCCuCCAa--------------GGuGCGGUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 106703 0.66 0.897101
Target:  5'- uGCCGGAGc-UCCGCGaCACCuugcaacUCCu -3'
miRNA:   3'- uCGGCCUCcaAGGUGCgGUGGua-----AGG- -5'
29065 3' -56.7 NC_006146.1 + 11535 0.66 0.897101
Target:  5'- gAGCUGGcGGUcagCUACGCCcccGCCAUgCUg -3'
miRNA:   3'- -UCGGCCuCCAa--GGUGCGG---UGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 47396 0.66 0.897101
Target:  5'- gGGuuGGAGcg-UCugGCCGCCAUgCUg -3'
miRNA:   3'- -UCggCCUCcaaGGugCGGUGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 98523 0.66 0.895814
Target:  5'- gGGCCccacccgacucGGGUUUCGuCGCCGCCAgccggUCCa -3'
miRNA:   3'- -UCGGcc---------UCCAAGGU-GCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 113509 0.66 0.890582
Target:  5'- cGGCCGGGcacggucgcGGggCCagcccaccgGCGCCACCg--CCg -3'
miRNA:   3'- -UCGGCCU---------CCaaGG---------UGCGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 102824 0.66 0.890582
Target:  5'- cGCgCGGGGGcUCUGCGCUugCucgcgCCg -3'
miRNA:   3'- uCG-GCCUCCaAGGUGCGGugGuaa--GG- -5'
29065 3' -56.7 NC_006146.1 + 127630 0.66 0.890582
Target:  5'- uGCCGGAcc-UCCAgGCCGCCcugugCCu -3'
miRNA:   3'- uCGGCCUccaAGGUgCGGUGGuaa--GG- -5'
29065 3' -56.7 NC_006146.1 + 61975 0.66 0.890582
Target:  5'- gGGCCGuuGAGGc-CCACGUCACCugcUCg -3'
miRNA:   3'- -UCGGC--CUCCaaGGUGCGGUGGua-AGg -5'
29065 3' -56.7 NC_006146.1 + 168257 0.66 0.890582
Target:  5'- gGGCUGGAuGGUcCC-CGCCguguggacgaaGCCGUgcUCCa -3'
miRNA:   3'- -UCGGCCU-CCAaGGuGCGG-----------UGGUA--AGG- -5'
29065 3' -56.7 NC_006146.1 + 57384 0.67 0.883844
Target:  5'- cGCCGGuGGgcuggCCcCGCgACCGUgCCc -3'
miRNA:   3'- uCGGCCuCCaa---GGuGCGgUGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 23422 0.67 0.883844
Target:  5'- uGCCGGAGGggcaguaCCACaagcuccgGCUGCCcgUCUc -3'
miRNA:   3'- uCGGCCUCCaa-----GGUG--------CGGUGGuaAGG- -5'
29065 3' -56.7 NC_006146.1 + 137773 0.67 0.883844
Target:  5'- uGGuCCGGuccGGGUgggCCugGuCCGCCGgaUCCg -3'
miRNA:   3'- -UC-GGCC---UCCAa--GGugC-GGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 66107 0.67 0.883844
Target:  5'- gGGCCGGGGGagCUACGggGCCGUg-- -3'
miRNA:   3'- -UCGGCCUCCaaGGUGCggUGGUAagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.