miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 57384 0.67 0.883844
Target:  5'- cGCCGGuGGgcuggCCcCGCgACCGUgCCc -3'
miRNA:   3'- uCGGCCuCCaa---GGuGCGgUGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 23422 0.67 0.883844
Target:  5'- uGCCGGAGGggcaguaCCACaagcuccgGCUGCCcgUCUc -3'
miRNA:   3'- uCGGCCUCCaa-----GGUG--------CGGUGGuaAGG- -5'
29065 3' -56.7 NC_006146.1 + 54050 0.67 0.882471
Target:  5'- uGUCGGcGGUggucagggcccaCCugGCCGCCGcgUCCc -3'
miRNA:   3'- uCGGCCuCCAa-----------GGugCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 99469 0.67 0.87689
Target:  5'- gAGCCGGGGGcaaCUAagGUCACCAccaUCCu -3'
miRNA:   3'- -UCGGCCUCCaa-GGUg-CGGUGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 30204 0.67 0.87689
Target:  5'- cAGCCaGAGGgccgCUGCGCCcGCCGggCUg -3'
miRNA:   3'- -UCGGcCUCCaa--GGUGCGG-UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 53493 0.67 0.869725
Target:  5'- gGGCCGGGGGUgcggUCugGCucuggCugCGggCCg -3'
miRNA:   3'- -UCGGCCUCCAa---GGugCG-----GugGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 124869 0.67 0.869725
Target:  5'- -cCUGGAGGgcCC-CGUCGCC-UUCCa -3'
miRNA:   3'- ucGGCCUCCaaGGuGCGGUGGuAAGG- -5'
29065 3' -56.7 NC_006146.1 + 118995 0.67 0.862352
Target:  5'- gAGCUGGGGGgaggaaGCGUCACCGggCUu -3'
miRNA:   3'- -UCGGCCUCCaagg--UGCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 27630 0.67 0.862352
Target:  5'- uGGCCagGGAaGUUCCgggccaGCGUCACCGggCCa -3'
miRNA:   3'- -UCGG--CCUcCAAGG------UGCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 127261 0.67 0.862352
Target:  5'- -aCUGGAGcGUUCCAC-CCACCGgcUCa -3'
miRNA:   3'- ucGGCCUC-CAAGGUGcGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 33243 0.67 0.862352
Target:  5'- cGCCGGcGGGUccgCCGgGCCGCUGccCCg -3'
miRNA:   3'- uCGGCC-UCCAa--GGUgCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 121217 0.67 0.862352
Target:  5'- aGGgUGGAGGaggaCgACGCCGCCAUagCCc -3'
miRNA:   3'- -UCgGCCUCCaa--GgUGCGGUGGUAa-GG- -5'
29065 3' -56.7 NC_006146.1 + 33119 0.67 0.862352
Target:  5'- cGCCGGcGGGUucgCCGgGCCGCUGccCCg -3'
miRNA:   3'- uCGGCC-UCCAa--GGUgCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 63259 0.67 0.862352
Target:  5'- uGGCCuccgGGGGGcUCUAC-CUggGCCAUUCCa -3'
miRNA:   3'- -UCGG----CCUCCaAGGUGcGG--UGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 15885 0.67 0.854779
Target:  5'- uGCCGGAGGgcUCgCugGCCucgaGCCAgcaacUUCUg -3'
miRNA:   3'- uCGGCCUCCa-AG-GugCGG----UGGU-----AAGG- -5'
29065 3' -56.7 NC_006146.1 + 48038 0.67 0.853241
Target:  5'- gGGCCGGcucGGGUcgUCCAgCGCC-CCGggcagcgugcggUCCa -3'
miRNA:   3'- -UCGGCC---UCCA--AGGU-GCGGuGGUa-----------AGG- -5'
29065 3' -56.7 NC_006146.1 + 126808 0.67 0.852469
Target:  5'- gGGCCuGGAGGuUUCCGCGgCguugguauuuaaaaACCAgcgUUCCc -3'
miRNA:   3'- -UCGG-CCUCC-AAGGUGCgG--------------UGGU---AAGG- -5'
29065 3' -56.7 NC_006146.1 + 120000 0.67 0.84701
Target:  5'- gGGCaCGGAGGc-CCAgGCCgcacccgcgGCCAgUCCg -3'
miRNA:   3'- -UCG-GCCUCCaaGGUgCGG---------UGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 48366 0.67 0.84701
Target:  5'- gGGCCGGccucGaGUUCCGCGaaCCACCcgggcUCCg -3'
miRNA:   3'- -UCGGCCu---C-CAAGGUGC--GGUGGua---AGG- -5'
29065 3' -56.7 NC_006146.1 + 20731 0.67 0.84701
Target:  5'- cGGCCuGcGAGGacCCGCGCCaaaagACCAU-CCu -3'
miRNA:   3'- -UCGG-C-CUCCaaGGUGCGG-----UGGUAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.