miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 126131 0.67 0.84701
Target:  5'- cGGCCuG-GGUUCCcCGCCcGCCGggCCc -3'
miRNA:   3'- -UCGGcCuCCAAGGuGCGG-UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 57220 0.67 0.84701
Target:  5'- gGGCCGGAGG--CCGgGCCcggGCCcgagCCa -3'
miRNA:   3'- -UCGGCCUCCaaGGUgCGG---UGGuaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 33365 0.67 0.84701
Target:  5'- cGCCGGuGGgUCCGCcggGCCGCUGccCCg -3'
miRNA:   3'- uCGGCCuCCaAGGUG---CGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 48366 0.67 0.84701
Target:  5'- gGGCCGGccucGaGUUCCGCGaaCCACCcgggcUCCg -3'
miRNA:   3'- -UCGGCCu---C-CAAGGUGC--GGUGGua---AGG- -5'
29065 3' -56.7 NC_006146.1 + 69020 0.68 0.839053
Target:  5'- gAGUCuGAGaUUCC-CGCCACCG-UCCu -3'
miRNA:   3'- -UCGGcCUCcAAGGuGCGGUGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 73465 0.68 0.839053
Target:  5'- aAGaagaGGAGGUUCCAU-CCACCuccggugUCCa -3'
miRNA:   3'- -UCgg--CCUCCAAGGUGcGGUGGua-----AGG- -5'
29065 3' -56.7 NC_006146.1 + 150781 0.68 0.830913
Target:  5'- uGGCCcccaGcAGGUgCCGgGCCACCGUgUCCa -3'
miRNA:   3'- -UCGGc---C-UCCAaGGUgCGGUGGUA-AGG- -5'
29065 3' -56.7 NC_006146.1 + 66052 0.68 0.830913
Target:  5'- uGCCGGAGGagcugaCGCGCUgugACCAccUCCc -3'
miRNA:   3'- uCGGCCUCCaag---GUGCGG---UGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 63978 0.68 0.830913
Target:  5'- cAGCCGGcugAGGUUCugCugGCUuCCAgUCCc -3'
miRNA:   3'- -UCGGCC---UCCAAG--GugCGGuGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 33399 0.68 0.825945
Target:  5'- gGGUgGGGGGUggCCcgccugggcaccgcuGCGCCGCCGcucggUCCu -3'
miRNA:   3'- -UCGgCCUCCAa-GG---------------UGCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 33277 0.68 0.825945
Target:  5'- gGGUgGGGGGUggCCcggcugggcaccgcuGCGCCGCCGcucggUCCu -3'
miRNA:   3'- -UCGgCCUCCAa-GG---------------UGCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 115381 0.68 0.814116
Target:  5'- gAGCUGGAGGc-CCugGCCGCUc---- -3'
miRNA:   3'- -UCGGCCUCCaaGGugCGGUGGuaagg -5'
29065 3' -56.7 NC_006146.1 + 146852 0.68 0.805473
Target:  5'- gGGCCuGGcucGGggCCGCGUCACCccgCCa -3'
miRNA:   3'- -UCGG-CCu--CCaaGGUGCGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 103106 0.68 0.805473
Target:  5'- gAGgCGGGGcagagCCugGCCGCCGUcacgUCCc -3'
miRNA:   3'- -UCgGCCUCcaa--GGugCGGUGGUA----AGG- -5'
29065 3' -56.7 NC_006146.1 + 49912 0.68 0.796679
Target:  5'- uAGUCGGAGGccgCCGagGCCACUcggUCCc -3'
miRNA:   3'- -UCGGCCUCCaa-GGUg-CGGUGGua-AGG- -5'
29065 3' -56.7 NC_006146.1 + 1227 0.69 0.78774
Target:  5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3'
miRNA:   3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 2159 0.69 0.78774
Target:  5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3'
miRNA:   3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 3091 0.69 0.78774
Target:  5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3'
miRNA:   3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 13847 0.69 0.778666
Target:  5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3'
miRNA:   3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 98934 0.69 0.778666
Target:  5'- uGGgCGGAGG-UCgGCGCCACgAagCCc -3'
miRNA:   3'- -UCgGCCUCCaAGgUGCGGUGgUaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.