miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 115202 0.66 0.778722
Target:  5'- gCGGGcAGAGccccccGGCGGCGGccGUGCCc- -3'
miRNA:   3'- -GCCCuUCUUa-----CCGCCGCCc-CACGGac -5'
29065 5' -60.3 NC_006146.1 + 115935 0.66 0.778722
Target:  5'- aCGGGGgcagcGGuagcGGCGGCGGcGGUcGCCc- -3'
miRNA:   3'- -GCCCU-----UCuua-CCGCCGCC-CCA-CGGac -5'
29065 5' -60.3 NC_006146.1 + 117825 0.73 0.355063
Target:  5'- aGGGGAGGAggaGGCGGUGGcGGUGUUc- -3'
miRNA:   3'- gCCCUUCUUa--CCGCCGCC-CCACGGac -5'
29065 5' -60.3 NC_006146.1 + 122489 0.69 0.546015
Target:  5'- uCGGGGAc---GGCGGCGGGGUcgagagaauggagGCCg- -3'
miRNA:   3'- -GCCCUUcuuaCCGCCGCCCCA-------------CGGac -5'
29065 5' -60.3 NC_006146.1 + 122633 0.73 0.337898
Target:  5'- cCGGGGcccucuuucgcgccAGGAcGGCGGCGGGG-GCCc- -3'
miRNA:   3'- -GCCCU--------------UCUUaCCGCCGCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 128815 0.72 0.394454
Target:  5'- aGGGAGGGGcGGCGGCagagGGGGUcacCCUGu -3'
miRNA:   3'- gCCCUUCUUaCCGCCG----CCCCAc--GGAC- -5'
29065 5' -60.3 NC_006146.1 + 129378 0.66 0.731606
Target:  5'- aGGGAAGc--GGCGGCcuccucuGGGGccggaaGCCUGc -3'
miRNA:   3'- gCCCUUCuuaCCGCCG-------CCCCa-----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 132862 0.66 0.7697
Target:  5'- -aGGAGaGGUGGgGGUGGGGguaaUGUCUGa -3'
miRNA:   3'- gcCCUUcUUACCgCCGCCCC----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 137032 0.79 0.153652
Target:  5'- cCGGGGAGGA-GGCcgGGUGGGG-GCCUGg -3'
miRNA:   3'- -GCCCUUCUUaCCG--CCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 137221 0.72 0.419407
Target:  5'- gGGGAGGAAgccgGGUGGGG-GCCUGg -3'
miRNA:   3'- gCCCUUCUUaccgCCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 137391 0.66 0.7697
Target:  5'- aGGGAGGGA-GGCcGgGaGGGUGCUg- -3'
miRNA:   3'- gCCCUUCUUaCCGcCgC-CCCACGGac -5'
29065 5' -60.3 NC_006146.1 + 137960 0.67 0.694109
Target:  5'- gGGGGAGGAUcGCGGCcgggccucccGGGG-GCCc- -3'
miRNA:   3'- gCCCUUCUUAcCGCCG----------CCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 139337 0.72 0.405149
Target:  5'- uCGGGAuguucuggugauguuAGg--GGCGGCgccggggGGGGUGCCUGc -3'
miRNA:   3'- -GCCCU---------------UCuuaCCGCCG-------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 139438 0.68 0.645026
Target:  5'- aGGaGAAGGcccccacgGUGccCGGgGGGGUGCCUGc -3'
miRNA:   3'- gCC-CUUCU--------UACc-GCCgCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 139477 0.7 0.527829
Target:  5'- uGGaGAAGGucuccacGGCacccGGgGGGGUGCCUGg -3'
miRNA:   3'- gCC-CUUCUua-----CCG----CCgCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 140095 0.66 0.723044
Target:  5'- gGuGGAAGAGggGGUGGCGGaGGUGgUg- -3'
miRNA:   3'- gC-CCUUCUUa-CCGCCGCC-CCACgGac -5'
29065 5' -60.3 NC_006146.1 + 140128 0.75 0.28489
Target:  5'- gGGGGuggcGGAgGUGGUGGCgGGGGUGCCc- -3'
miRNA:   3'- gCCCU----UCU-UACCGCCG-CCCCACGGac -5'
29065 5' -60.3 NC_006146.1 + 141284 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 141423 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 141588 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.