miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 53754 0.73 0.362716
Target:  5'- gGGcGAAGAcgGGCGGCGGGcGgagGUCUc -3'
miRNA:   3'- gCC-CUUCUuaCCGCCGCCC-Ca--CGGAc -5'
29065 5' -60.3 NC_006146.1 + 55029 0.76 0.248304
Target:  5'- gCGGGcGGGAUGGgGGuCGGGGccgggGCCUGc -3'
miRNA:   3'- -GCCCuUCUUACCgCC-GCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 57020 0.69 0.576092
Target:  5'- cCGaGGAGGAgGUGGCGGUGGaGUGCg-- -3'
miRNA:   3'- -GC-CCUUCU-UACCGCCGCCcCACGgac -5'
29065 5' -60.3 NC_006146.1 + 57055 0.68 0.605538
Target:  5'- aGGGuuGA--GGCGGgaGGGG-GCCUGa -3'
miRNA:   3'- gCCCuuCUuaCCGCCg-CCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 57365 0.66 0.741982
Target:  5'- aGGGAGGcu--GCGGCGGuGGcGCCg- -3'
miRNA:   3'- gCCCUUCuuacCGCCGCC-CCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 60135 0.74 0.304725
Target:  5'- gGGGAGGGAccUGGUGG-GGGGUGUgUGc -3'
miRNA:   3'- gCCCUUCUU--ACCGCCgCCCCACGgAC- -5'
29065 5' -60.3 NC_006146.1 + 64804 0.68 0.613426
Target:  5'- -cGGAAGAAUGGCGGUucggugaacagggGGGGUuaacacccgcagaGCCg- -3'
miRNA:   3'- gcCCUUCUUACCGCCG-------------CCCCA-------------CGGac -5'
29065 5' -60.3 NC_006146.1 + 69530 0.66 0.778722
Target:  5'- uGGuGAGGAAUgGGgGGUGGGG-GCaUUGa -3'
miRNA:   3'- gCC-CUUCUUA-CCgCCGCCCCaCG-GAC- -5'
29065 5' -60.3 NC_006146.1 + 70260 0.67 0.694109
Target:  5'- uCGGGGAacAUGGCGGUgauGGGGaccacgGCCg- -3'
miRNA:   3'- -GCCCUUcuUACCGCCG---CCCCa-----CGGac -5'
29065 5' -60.3 NC_006146.1 + 72080 0.67 0.674565
Target:  5'- aCGGGuGGAAUGGUGGCGuGGaaCCUc -3'
miRNA:   3'- -GCCCuUCUUACCGCCGCcCCacGGAc -5'
29065 5' -60.3 NC_006146.1 + 77831 0.69 0.566342
Target:  5'- aCGGcGGAGGGgggGGCGGgGGGGUGg--- -3'
miRNA:   3'- -GCC-CUUCUUa--CCGCCgCCCCACggac -5'
29065 5' -60.3 NC_006146.1 + 84088 0.69 0.585878
Target:  5'- aCGGGcGAGAAUGG-GGCGGGcucaugGCCa- -3'
miRNA:   3'- -GCCC-UUCUUACCgCCGCCCca----CGGac -5'
29065 5' -60.3 NC_006146.1 + 90212 0.69 0.595696
Target:  5'- gGGGAAGAGgaggaGGCGGUGGaGGaggcaGCCg- -3'
miRNA:   3'- gCCCUUCUUa----CCGCCGCC-CCa----CGGac -5'
29065 5' -60.3 NC_006146.1 + 90648 0.66 0.760564
Target:  5'- uGGGAGGcgccGCGGCGaGGGUGgCa- -3'
miRNA:   3'- gCCCUUCuuacCGCCGC-CCCACgGac -5'
29065 5' -60.3 NC_006146.1 + 93878 0.68 0.654891
Target:  5'- aGGGAGGAAaggggGGCGGaauuugcggcaGGGGggGCCa- -3'
miRNA:   3'- gCCCUUCUUa----CCGCCg----------CCCCa-CGGac -5'
29065 5' -60.3 NC_006146.1 + 98849 1.07 0.00169
Target:  5'- aCGGGAAGAAUGGCGGCGGGGUGCCUGc -3'
miRNA:   3'- -GCCCUUCUUACCGCCGCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 100006 0.72 0.402665
Target:  5'- uCGGGAgcgggcacgucGGGA-GGCGGCGGGGU-CCg- -3'
miRNA:   3'- -GCCCU-----------UCUUaCCGCCGCCCCAcGGac -5'
29065 5' -60.3 NC_006146.1 + 101704 0.66 0.741983
Target:  5'- gGGGggGAGaGaGCaGCGGGG-GUUUGg -3'
miRNA:   3'- gCCCuuCUUaC-CGcCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 105200 0.69 0.566342
Target:  5'- cCGGGGAGcc-GGgGGUGcccGGUGCCUGa -3'
miRNA:   3'- -GCCCUUCuuaCCgCCGCc--CCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 112216 0.66 0.741982
Target:  5'- -uGGAcAGggUGGCGGCcuGGGUGgUUGc -3'
miRNA:   3'- gcCCU-UCuuACCGCCGc-CCCACgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.