miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 154068 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 153899 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 153734 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 153596 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 153411 0.66 0.741982
Target:  5'- aGGGAGuucccGGgGGCGGGuGUGgCUGg -3'
miRNA:   3'- gCCCUUcuua-CCgCCGCCC-CACgGAC- -5'
29065 5' -60.3 NC_006146.1 + 150990 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 150821 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 150674 0.72 0.402665
Target:  5'- gGGGAGGggUGGggagUGGCcaGGGGgacggaggGCCUGg -3'
miRNA:   3'- gCCCUUCuuACC----GCCG--CCCCa-------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 150518 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147912 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147743 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147710 0.73 0.370482
Target:  5'- aGGGccAGGAA-GGCGGCGGG--GCCUGg -3'
miRNA:   3'- gCCC--UUCUUaCCGCCGCCCcaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147579 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 147440 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 144834 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 144666 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 144501 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 144362 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 141756 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 141588 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.