miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 168309 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 57055 0.68 0.605538
Target:  5'- aGGGuuGA--GGCGGgaGGGG-GCCUGa -3'
miRNA:   3'- gCCCuuCUuaCCGCCg-CCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 167273 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 4964 0.75 0.266088
Target:  5'- aGGGGccacgAGAGccuccUGGCGGCcucacuaacgcGGGGUGCCUGu -3'
miRNA:   3'- gCCCU-----UCUU-----ACCGCCG-----------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 112216 0.66 0.741982
Target:  5'- -uGGAcAGggUGGCGGCcuGGGUGgUUGc -3'
miRNA:   3'- gcCCU-UCuuACCGCCGc-CCCACgGAC- -5'
29065 5' -60.3 NC_006146.1 + 137960 0.67 0.694109
Target:  5'- gGGGGAGGAUcGCGGCcgggccucccGGGG-GCCc- -3'
miRNA:   3'- gCCCUUCUUAcCGCCG----------CCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 51504 0.69 0.585878
Target:  5'- uGGGAAGuuGUGGggucUGGCGGGG-GUUUGg -3'
miRNA:   3'- gCCCUUCu-UACC----GCCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 55029 0.76 0.248304
Target:  5'- gCGGGcGGGAUGGgGGuCGGGGccgggGCCUGc -3'
miRNA:   3'- -GCCCuUCUUACCgCC-GCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 34015 0.67 0.66474
Target:  5'- aGGGggGGGgucggGGCaGGCGGGcGUggucccgggGCCUa -3'
miRNA:   3'- gCCCuuCUUa----CCG-CCGCCC-CA---------CGGAc -5'
29065 5' -60.3 NC_006146.1 + 51888 0.78 0.169511
Target:  5'- aGGGGAGggUGGaggcugcguCGGCGGGG-GCCUc -3'
miRNA:   3'- gCCCUUCuuACC---------GCCGCCCCaCGGAc -5'
29065 5' -60.3 NC_006146.1 + 90212 0.69 0.595696
Target:  5'- gGGGAAGAGgaggaGGCGGUGGaGGaggcaGCCg- -3'
miRNA:   3'- gCCCUUCUUa----CCGCCGCC-CCa----CGGac -5'
29065 5' -60.3 NC_006146.1 + 169241 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 52079 0.7 0.527828
Target:  5'- aCGGGAGGGcu-GCGGuCGGGG-GCCg- -3'
miRNA:   3'- -GCCCUUCUuacCGCC-GCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 168205 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 147710 0.73 0.370482
Target:  5'- aGGGccAGGAA-GGCGGCGGG--GCCUGg -3'
miRNA:   3'- gCCC--UUCUUaCCGCCGCCCcaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 60135 0.74 0.304725
Target:  5'- gGGGAGGGAccUGGUGG-GGGGUGUgUGc -3'
miRNA:   3'- gCCCUUCUU--ACCGCCgCCCCACGgAC- -5'
29065 5' -60.3 NC_006146.1 + 170493 0.66 0.764232
Target:  5'- gCGGGggGcuuccccggacccccAGcGcGCGGCGGGcGggGCCUGa -3'
miRNA:   3'- -GCCCuuC---------------UUaC-CGCCGCCC-Ca-CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 40719 0.66 0.751322
Target:  5'- uCGGGucucAGGuccgGGCaGGCGGGcccGUGCUUGg -3'
miRNA:   3'- -GCCCu---UCUua--CCG-CCGCCC---CACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 153411 0.66 0.741982
Target:  5'- aGGGAGuucccGGgGGCGGGuGUGgCUGg -3'
miRNA:   3'- gCCCUUcuua-CCgCCGCCC-CACgGAC- -5'
29065 5' -60.3 NC_006146.1 + 51573 0.67 0.703813
Target:  5'- uGGGGAGGcgGcGCGGCcgaagGGGGgacugagGCCg- -3'
miRNA:   3'- gCCCUUCUuaC-CGCCG-----CCCCa------CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.