miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 150674 0.72 0.402665
Target:  5'- gGGGAGGggUGGggagUGGCcaGGGGgacggaggGCCUGg -3'
miRNA:   3'- gCCCUUCuuACC----GCCG--CCCCa-------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 100006 0.72 0.402665
Target:  5'- uCGGGAgcgggcacgucGGGA-GGCGGCGGGGU-CCg- -3'
miRNA:   3'- -GCCCU-----------UCUUaCCGCCGCCCCAcGGac -5'
29065 5' -60.3 NC_006146.1 + 139337 0.72 0.405149
Target:  5'- uCGGGAuguucuggugauguuAGg--GGCGGCgccggggGGGGUGCCUGc -3'
miRNA:   3'- -GCCCU---------------UCuuaCCGCCG-------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 42542 0.72 0.419407
Target:  5'- uGGGAagcAGAcgGGgGGUGGGGggGCgCUGa -3'
miRNA:   3'- gCCCU---UCUuaCCgCCGCCCCa-CG-GAC- -5'
29065 5' -60.3 NC_006146.1 + 161747 0.72 0.419407
Target:  5'- cCGGGG---GUGGCGGCugagguccgagGGGGcGCCUGg -3'
miRNA:   3'- -GCCCUucuUACCGCCG-----------CCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 137221 0.72 0.419407
Target:  5'- gGGGAGGAAgccgGGUGGGG-GCCUGg -3'
miRNA:   3'- gCCCUUCUUaccgCCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 165994 0.71 0.463038
Target:  5'- aGGGAuccaaagaguaGGGAUGcauGCGGUugugggcaucgGGGGUGCCUGu -3'
miRNA:   3'- gCCCU-----------UCUUAC---CGCCG-----------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 3793 0.71 0.463038
Target:  5'- gGGGggGGggGGCacGCGGGGgaugGCCa- -3'
miRNA:   3'- gCCCuuCUuaCCGc-CGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 170069 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 169137 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 167273 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 168205 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 52079 0.7 0.527828
Target:  5'- aCGGGAGGGcu-GCGGuCGGGG-GCCg- -3'
miRNA:   3'- -GCCCUUCUuacCGCC-GCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 139477 0.7 0.527829
Target:  5'- uGGaGAAGGucuccacGGCacccGGgGGGGUGCCUGg -3'
miRNA:   3'- gCC-CUUCUua-----CCG----CCgCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 122489 0.69 0.546015
Target:  5'- uCGGGGAc---GGCGGCGGGGUcgagagaauggagGCCg- -3'
miRNA:   3'- -GCCCUUcuuaCCGCCGCCCCA-------------CGGac -5'
29065 5' -60.3 NC_006146.1 + 167785 0.69 0.546978
Target:  5'- gCGGGGAGAAUGacagcugggcGUGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUAC----------CGCCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 168717 0.69 0.546978
Target:  5'- gCGGGGAGAAUGacagcugggcGUGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUAC----------CGCCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 105200 0.69 0.566342
Target:  5'- cCGGGGAGcc-GGgGGUGcccGGUGCCUGa -3'
miRNA:   3'- -GCCCUUCuuaCCgCCGCc--CCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 77831 0.69 0.566342
Target:  5'- aCGGcGGAGGGgggGGCGGgGGGGUGg--- -3'
miRNA:   3'- -GCC-CUUCUUa--CCGCCgCCCCACggac -5'
29065 5' -60.3 NC_006146.1 + 57020 0.69 0.576092
Target:  5'- cCGaGGAGGAgGUGGCGGUGGaGUGCg-- -3'
miRNA:   3'- -GC-CCUUCU-UACCGCCGCCcCACGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.