miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 140095 0.66 0.723044
Target:  5'- gGuGGAAGAGggGGUGGCGGaGGUGgUg- -3'
miRNA:   3'- gC-CCUUCUUa-CCGCCGCC-CCACgGac -5'
29065 5' -60.3 NC_006146.1 + 169650 0.66 0.722088
Target:  5'- gCGGGGAGAAUacagcugGGCguGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUA-------CCG--CCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 10884 0.67 0.71346
Target:  5'- uGGGGAGAcagcggGGCGGUGGGcaaugcGCCa- -3'
miRNA:   3'- gCCCUUCUua----CCGCCGCCCca----CGGac -5'
29065 5' -60.3 NC_006146.1 + 51573 0.67 0.703813
Target:  5'- uGGGGAGGcgGcGCGGCcgaagGGGGgacugagGCCg- -3'
miRNA:   3'- gCCCUUCUuaC-CGCCG-----CCCCa------CGGac -5'
29065 5' -60.3 NC_006146.1 + 137960 0.67 0.694109
Target:  5'- gGGGGAGGAUcGCGGCcgggccucccGGGG-GCCc- -3'
miRNA:   3'- gCCCUUCUUAcCGCCG----------CCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 70260 0.67 0.694109
Target:  5'- uCGGGGAacAUGGCGGUgauGGGGaccacgGCCg- -3'
miRNA:   3'- -GCCCUUcuUACCGCCG---CCCCa-----CGGac -5'
29065 5' -60.3 NC_006146.1 + 18864 0.67 0.684357
Target:  5'- cCGGGGu-GGUGGaCGuGCGGGG-GCCUc -3'
miRNA:   3'- -GCCCUucUUACC-GC-CGCCCCaCGGAc -5'
29065 5' -60.3 NC_006146.1 + 72080 0.67 0.674565
Target:  5'- aCGGGuGGAAUGGUGGCGuGGaaCCUc -3'
miRNA:   3'- -GCCCuUCUUACCGCCGCcCCacGGAc -5'
29065 5' -60.3 NC_006146.1 + 144501 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 4856 0.67 0.664741
Target:  5'- gGGGAAuAggGGCaggGGCGGGG-GCCa- -3'
miRNA:   3'- gCCCUUcUuaCCG---CCGCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 156812 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 153734 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 147579 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 141423 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 34015 0.67 0.66474
Target:  5'- aGGGggGGGgucggGGCaGGCGGGcGUggucccgggGCCUa -3'
miRNA:   3'- gCCCuuCUUa----CCG-CCGCCC-CA---------CGGAc -5'
29065 5' -60.3 NC_006146.1 + 93878 0.68 0.654891
Target:  5'- aGGGAGGAAaggggGGCGGaauuugcggcaGGGGggGCCa- -3'
miRNA:   3'- gCCCUUCUUa----CCGCCg----------CCCCa-CGGac -5'
29065 5' -60.3 NC_006146.1 + 156977 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147743 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 144666 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 139438 0.68 0.645026
Target:  5'- aGGaGAAGGcccccacgGUGccCGGgGGGGUGCCUGc -3'
miRNA:   3'- gCC-CUUCU--------UACc-GCCgCCCCACGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.