miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 139438 0.68 0.645026
Target:  5'- aGGaGAAGGcccccacgGUGccCGGgGGGGUGCCUGc -3'
miRNA:   3'- gCC-CUUCU--------UACc-GCCgCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 141588 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 156977 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 150518 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147440 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 144362 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 141284 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 153596 0.68 0.625273
Target:  5'- uGGGcGAGGuuugggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua----CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 167377 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 169241 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 170172 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 168309 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 64804 0.68 0.613426
Target:  5'- -cGGAAGAAUGGCGGUucggugaacagggGGGGUuaacacccgcagaGCCg- -3'
miRNA:   3'- gcCCUUCUUACCGCCG-------------CCCCA-------------CGGac -5'
29065 5' -60.3 NC_006146.1 + 57055 0.68 0.605538
Target:  5'- aGGGuuGA--GGCGGgaGGGG-GCCUGa -3'
miRNA:   3'- gCCCuuCUuaCCGCCg-CCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 47989 0.68 0.605538
Target:  5'- uGGGGucAGAGguggcUGGUGGCGGGaG-GCUUGg -3'
miRNA:   3'- gCCCU--UCUU-----ACCGCCGCCC-CaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 90212 0.69 0.595696
Target:  5'- gGGGAAGAGgaggaGGCGGUGGaGGaggcaGCCg- -3'
miRNA:   3'- gCCCUUCUUa----CCGCCGCC-CCa----CGGac -5'
29065 5' -60.3 NC_006146.1 + 51504 0.69 0.585878
Target:  5'- uGGGAAGuuGUGGggucUGGCGGGG-GUUUGg -3'
miRNA:   3'- gCCCUUCu-UACC----GCCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 84088 0.69 0.585878
Target:  5'- aCGGGcGAGAAUGG-GGCGGGcucaugGCCa- -3'
miRNA:   3'- -GCCC-UUCUUACCgCCGCCCca----CGGac -5'
29065 5' -60.3 NC_006146.1 + 156674 0.69 0.585878
Target:  5'- uGGGcGAGGuuuggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua---CCGCCG-CCCCa--------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 57020 0.69 0.576092
Target:  5'- cCGaGGAGGAgGUGGCGGUGGaGUGCg-- -3'
miRNA:   3'- -GC-CCUUCU-UACCGCCGCCcCACGgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.