miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 170493 0.66 0.764232
Target:  5'- gCGGGggGcuuccccggacccccAGcGcGCGGCGGGcGggGCCUGa -3'
miRNA:   3'- -GCCCuuC---------------UUaC-CGCCGCCC-Ca-CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 170172 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 170069 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 169650 0.66 0.722088
Target:  5'- gCGGGGAGAAUacagcugGGCguGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUA-------CCG--CCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 169241 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 169137 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 168717 0.69 0.546978
Target:  5'- gCGGGGAGAAUGacagcugggcGUGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUAC----------CGCCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 168309 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 168205 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 167785 0.69 0.546978
Target:  5'- gCGGGGAGAAUGacagcugggcGUGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUAC----------CGCCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 167377 0.68 0.614413
Target:  5'- cCGGGGgcuGAGggGGCucccgagGGCGGGGccgggGCCUGg -3'
miRNA:   3'- -GCCCUu--CUUa-CCG-------CCGCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 167273 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 166666 0.66 0.778722
Target:  5'- gCGGGAAGGggGaGCGGUGug--GCCUGg -3'
miRNA:   3'- -GCCCUUCUuaC-CGCCGCcccaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 165994 0.71 0.463038
Target:  5'- aGGGAuccaaagaguaGGGAUGcauGCGGUugugggcaucgGGGGUGCCUGu -3'
miRNA:   3'- gCCCU-----------UCUUAC---CGCCG-----------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 162035 0.66 0.732554
Target:  5'- uGGGAGcc-UGGgGGCGGGGgcagGCUg- -3'
miRNA:   3'- gCCCUUcuuACCgCCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 161747 0.72 0.419407
Target:  5'- cCGGGG---GUGGCGGCugagguccgagGGGGcGCCUGg -3'
miRNA:   3'- -GCCCUucuUACCGCCG-----------CCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 157146 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 156977 0.68 0.645026
Target:  5'- gGGGAGGGAgagaGGagggggaGGCGGGcGcccuUGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCg------CCGCCC-C----ACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 156812 0.67 0.664741
Target:  5'- aCGGGccuGGggUGGCcggggaggGGUGGGGagugGCCa- -3'
miRNA:   3'- -GCCCu--UCuuACCG--------CCGCCCCa---CGGac -5'
29065 5' -60.3 NC_006146.1 + 156674 0.69 0.585878
Target:  5'- uGGGcGAGGuuuggGGCGGCuGGGGgucgggcugGCCUGc -3'
miRNA:   3'- gCCC-UUCUua---CCGCCG-CCCCa--------CGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.