miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 13441 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 170166 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 61491 0.75 0.313007
Target:  5'- -gGAUCA-CCAGGGCUCcgagGAGGCCCCUg -3'
miRNA:   3'- aaCUGGUcGGUCCUGAG----CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 55767 0.7 0.573918
Target:  5'- -cGGCgGGCCAGGGgcagCGAGGCCaCCa -3'
miRNA:   3'- aaCUGgUCGGUCCUga--GCUUCGGgGG- -5'
29067 3' -58.8 NC_006146.1 + 47521 0.8 0.152289
Target:  5'- -aGuuCCAGCCAGGuugCGggGCCCCCg -3'
miRNA:   3'- aaCu-GGUCGGUCCugaGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 50354 0.68 0.684222
Target:  5'- -cGGCCAGCCugGGGAuCUUGGccagcAGUCCCg -3'
miRNA:   3'- aaCUGGUCGG--UCCU-GAGCU-----UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 152019 0.73 0.389563
Target:  5'- -aGAagcaCAGUgGGGGCU-GAGGCCCCCg -3'
miRNA:   3'- aaCUg---GUCGgUCCUGAgCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 138090 0.68 0.674243
Target:  5'- -gGGCCGGCUGGGGgUUGugcacCCCCCg -3'
miRNA:   3'- aaCUGGUCGGUCCUgAGCuuc--GGGGG- -5'
29067 3' -58.8 NC_006146.1 + 159270 0.69 0.654193
Target:  5'- --cGCC-GCCAcgcGGGcCUCGggGCCCUCg -3'
miRNA:   3'- aacUGGuCGGU---CCU-GAGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 41849 0.69 0.624011
Target:  5'- -gGGCCguGGCCAgGGGCUacCGggGCCUCg -3'
miRNA:   3'- aaCUGG--UCGGU-CCUGA--GCuuCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 55795 0.69 0.600897
Target:  5'- --cGCUGGCCAGcGACUCGggGCgguggaagaggccgUCCCg -3'
miRNA:   3'- aacUGGUCGGUC-CUGAGCuuCG--------------GGGG- -5'
29067 3' -58.8 NC_006146.1 + 28831 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 19597 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 149992 0.7 0.554115
Target:  5'- -aGGUCGGCC-GGACUCaGGGCCUCCa -3'
miRNA:   3'- aaCUGGUCGGuCCUGAGcUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 138871 0.71 0.524812
Target:  5'- aUGACCugGGCCAGcGcCUcguccCGAGGCCCCUc -3'
miRNA:   3'- aACUGG--UCGGUC-CuGA-----GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 25873 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 16639 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 167371 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 163180 0.72 0.459011
Target:  5'- uUUGACCGGgCAGuGGCUUGGcuucuGCCCCUc -3'
miRNA:   3'- -AACUGGUCgGUC-CUGAGCUu----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 67225 0.73 0.397864
Target:  5'- cUGGCCGGCCAGGcACagGAAGCCa-- -3'
miRNA:   3'- aACUGGUCGGUCC-UGagCUUCGGggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.