miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 25873 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 16639 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 156854 0.72 0.449965
Target:  5'- --aGCCAGCCGGcGCUUGcgccuGCCCCCg -3'
miRNA:   3'- aacUGGUCGGUCcUGAGCuu---CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 109411 0.74 0.342199
Target:  5'- -cGGCCgucGGUCAGGGCcCGuuuGGCCCCCu -3'
miRNA:   3'- aaCUGG---UCGGUCCUGaGCu--UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 16519 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 47300 0.71 0.534518
Target:  5'- ----gCAGCCGGGACUCcucccGGGCCUCCu -3'
miRNA:   3'- aacugGUCGGUCCUGAGc----UUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 170166 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 61491 0.75 0.313007
Target:  5'- -gGAUCA-CCAGGGCUCcgagGAGGCCCCUg -3'
miRNA:   3'- aaCUGGUcGGUCCUGAG----CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 138871 0.71 0.524812
Target:  5'- aUGACCugGGCCAGcGcCUcguccCGAGGCCCCUc -3'
miRNA:   3'- aACUGG--UCGGUC-CuGA-----GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 47521 0.8 0.152289
Target:  5'- -aGuuCCAGCCAGGuugCGggGCCCCCg -3'
miRNA:   3'- aaCu-GGUCGGUCCugaGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 13561 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 28950 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 167371 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 163180 0.72 0.459011
Target:  5'- uUUGACCGGgCAGuGGCUUGGcuucuGCCCCUc -3'
miRNA:   3'- -AACUGGUCgGUC-CUGAGCUu----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 67225 0.73 0.397864
Target:  5'- cUGGCCGGCCAGGcACagGAAGCCa-- -3'
miRNA:   3'- aACUGGUCGGUCC-UGagCUUCGGggg -5'
29067 3' -58.8 NC_006146.1 + 152019 0.73 0.389563
Target:  5'- -aGAagcaCAGUgGGGGCU-GAGGCCCCCg -3'
miRNA:   3'- aaCUg---GUCGgUCCUGAgCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 28831 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 19597 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 34135 0.7 0.573918
Target:  5'- -gGAUCgcGGCCGGGcCUccCGGAGCCCCg -3'
miRNA:   3'- aaCUGG--UCGGUCCuGA--GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 56860 0.71 0.534518
Target:  5'- -cGGCagcuuuGGCUGGGGCUgGcGGCCCCCg -3'
miRNA:   3'- aaCUGg-----UCGGUCCUGAgCuUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.