miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 99680 1.1 0.001452
Target:  5'- gUUGACCAGCCAGGACUCGAAGCCCCCg -3'
miRNA:   3'- -AACUGGUCGGUCCUGAGCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 170166 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 16639 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 4516 0.65 0.82323
Target:  5'- -gGGCCAGCgGGGGgugaccauCUCGGugccggcAGCCgCCg -3'
miRNA:   3'- aaCUGGUCGgUCCU--------GAGCU-------UCGGgGG- -5'
29067 3' -58.8 NC_006146.1 + 152019 0.73 0.389563
Target:  5'- -aGAagcaCAGUgGGGGCU-GAGGCCCCCg -3'
miRNA:   3'- aaCUg---GUCGgUCCUGAgCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 120061 0.73 0.389563
Target:  5'- gUGGCgCugcugcGCCGGGAagaCGGAGCCCCCa -3'
miRNA:   3'- aACUG-Gu-----CGGUCCUga-GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 67225 0.73 0.397864
Target:  5'- cUGGCCGGCCAGGcACagGAAGCCa-- -3'
miRNA:   3'- aACUGGUCGGUCC-UGagCUUCGGggg -5'
29067 3' -58.8 NC_006146.1 + 52982 0.73 0.406277
Target:  5'- -gGGCgGGgCGGGcguCUCGAGGCCCCUc -3'
miRNA:   3'- aaCUGgUCgGUCCu--GAGCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 163180 0.72 0.459011
Target:  5'- uUUGACCGGgCAGuGGCUUGGcuucuGCCCCUc -3'
miRNA:   3'- -AACUGGUCgGUC-CUGAGCUu----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 169235 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 130045 0.72 0.477385
Target:  5'- -gGACCgcgAGCCGGGcCUCcaaGAGcGCCCCCu -3'
miRNA:   3'- aaCUGG---UCGGUCCuGAG---CUU-CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 156854 0.72 0.449965
Target:  5'- --aGCCAGCCGGcGCUUGcgccuGCCCCCg -3'
miRNA:   3'- aacUGGUCGGUCcUGAGCuu---CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 47521 0.8 0.152289
Target:  5'- -aGuuCCAGCCAGGuugCGggGCCCCCg -3'
miRNA:   3'- aaCu-GGUCGGUCCugaGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 167371 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 61491 0.75 0.313007
Target:  5'- -gGAUCA-CCAGGGCUCcgagGAGGCCCCUg -3'
miRNA:   3'- aaCUGGUcGGUCCUGAG----CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 113419 0.72 0.441019
Target:  5'- gUGGCuCGGUCAGGGuCUCGgcGUCUCCa -3'
miRNA:   3'- aACUG-GUCGGUCCU-GAGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 168303 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 13561 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 109411 0.74 0.342199
Target:  5'- -cGGCCgucGGUCAGGGCcCGuuuGGCCCCCu -3'
miRNA:   3'- aaCUGG---UCGGUCCUGaGCu--UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 46340 0.73 0.395362
Target:  5'- cUGACCAGCCgguaggugAGGACcgcgucCGAcagcagcucccccaGGCCCCCg -3'
miRNA:   3'- aACUGGUCGG--------UCCUGa-----GCU--------------UCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.