miRNA display CGI


Results 1 - 20 of 265 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 704 0.71 0.501801
Target:  5'- cUGGCCcccGCCAGGccccggccccgccCUCgGGAGCCCCCu -3'
miRNA:   3'- aACUGGu--CGGUCCu------------GAG-CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 770 0.67 0.761831
Target:  5'- -cGugCAGCCgagcgugacgacGGGACgcccCGccGGCCCCCc -3'
miRNA:   3'- aaCugGUCGG------------UCCUGa---GCu-UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 1635 0.71 0.501801
Target:  5'- cUGGCCcccGCCAGGccccggccccgccCUCgGGAGCCCCCu -3'
miRNA:   3'- aACUGGu--CGGUCCu------------GAG-CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 1701 0.67 0.761831
Target:  5'- -cGugCAGCCgagcgugacgacGGGACgcccCGccGGCCCCCc -3'
miRNA:   3'- aaCugGUCGG------------UCCUGa---GCu-UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 2567 0.71 0.501801
Target:  5'- cUGGCCcccGCCAGGccccggccccgccCUCgGGAGCCCCCu -3'
miRNA:   3'- aACUGGu--CGGUCCu------------GAG-CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 2633 0.67 0.761831
Target:  5'- -cGugCAGCCgagcgugacgacGGGACgcccCGccGGCCCCCc -3'
miRNA:   3'- aaCugGUCGG------------UCCUGa---GCu-UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 3499 0.71 0.501801
Target:  5'- cUGGCCcccGCCAGGccccggccccgccCUCgGGAGCCCCCu -3'
miRNA:   3'- aACUGGu--CGGUCCu------------GAG-CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 3565 0.67 0.761831
Target:  5'- -cGugCAGCCgagcgugacgacGGGACgcccCGccGGCCCCCc -3'
miRNA:   3'- aaCugGUCGG------------UCCUGa---GCu-UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 3885 0.66 0.80701
Target:  5'- cUGGucUCGGCgAGGcccACcgaCGAGGCCCCCa -3'
miRNA:   3'- aACU--GGUCGgUCC---UGa--GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 4516 0.65 0.82323
Target:  5'- -gGGCCAGCgGGGGgugaccauCUCGGugccggcAGCCgCCg -3'
miRNA:   3'- aaCUGGUCGgUCCU--------GAGCU-------UCGGgGG- -5'
29067 3' -58.8 NC_006146.1 + 6195 0.67 0.771124
Target:  5'- -gGAUUAGaggaUAGGACUCGuucGCCCCg -3'
miRNA:   3'- aaCUGGUCg---GUCCUGAGCuu-CGGGGg -5'
29067 3' -58.8 NC_006146.1 + 8601 0.69 0.624011
Target:  5'- gUGAgCgGGUCAGaaaGACUCGAcGGCCCCUg -3'
miRNA:   3'- aACU-GgUCGGUC---CUGAGCU-UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 9908 0.7 0.544288
Target:  5'- -cGGCCAGgCAGGAggcgaCGGAGCCCgCg -3'
miRNA:   3'- aaCUGGUCgGUCCUga---GCUUCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 11479 0.69 0.634076
Target:  5'- -cGACCaucAGCCAcccGGACUCGggGgCCgUCa -3'
miRNA:   3'- aaCUGG---UCGGU---CCUGAGCuuC-GGgGG- -5'
29067 3' -58.8 NC_006146.1 + 11587 0.71 0.505606
Target:  5'- -cGGCCAGCCucaacuacGACUCcuGGCCCCUg -3'
miRNA:   3'- aaCUGGUCGGuc------CUGAGcuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 11624 0.66 0.80701
Target:  5'- -cGACU-GCgAGGGCccCGAGGCCCgCg -3'
miRNA:   3'- aaCUGGuCGgUCCUGa-GCUUCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 12447 0.66 0.789341
Target:  5'- aUGAgCCAggcGCCGGGGCcuuUC-AGGCCCUCg -3'
miRNA:   3'- aACU-GGU---CGGUCCUG---AGcUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 13107 0.66 0.798248
Target:  5'- -gGACCuGGCCcuguuuguGGACg-GggGCUCCCg -3'
miRNA:   3'- aaCUGG-UCGGu-------CCUGagCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 13441 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 13561 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.