miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 170739 0.67 0.771124
Target:  5'- -cGAcCCAGCCGa-GCgugaCGAAGCCCCUc -3'
miRNA:   3'- aaCU-GGUCGGUccUGa---GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 170206 0.67 0.752427
Target:  5'- -gGGCCuGGCgGGGGCcagcgCGggGUCCCg -3'
miRNA:   3'- aaCUGG-UCGgUCCUGa----GCuuCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 170166 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 169808 0.67 0.771124
Target:  5'- -cGAcCCAGCCGa-GCgugaCGAAGCCCCUc -3'
miRNA:   3'- aaCU-GGUCGGUccUGa---GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 169275 0.67 0.752427
Target:  5'- -gGGCCuGGCgGGGGCcagcgCGggGUCCCg -3'
miRNA:   3'- aaCUGG-UCGgUCCUGa----GCuuCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 169235 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 169155 0.67 0.771124
Target:  5'- aUGGCCGGCgggaGGGGC-CGgcGCCUgCa -3'
miRNA:   3'- aACUGGUCGg---UCCUGaGCuuCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 168876 0.67 0.771124
Target:  5'- -cGAcCCAGCCGa-GCgugaCGAAGCCCCUc -3'
miRNA:   3'- aaCU-GGUCGGUccUGa---GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 168343 0.67 0.752427
Target:  5'- -gGGCCuGGCgGGGGCcagcgCGggGUCCCg -3'
miRNA:   3'- aaCUGG-UCGgUCCUGa----GCuuCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 168303 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 168223 0.67 0.771124
Target:  5'- aUGGCCGGCgggaGGGGC-CGgcGCCUgCa -3'
miRNA:   3'- aACUGGUCGg---UCCUGaGCuuCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 167944 0.67 0.771124
Target:  5'- -cGAcCCAGCCGa-GCgugaCGAAGCCCCUc -3'
miRNA:   3'- aaCU-GGUCGGUccUGa---GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 167411 0.67 0.752427
Target:  5'- -gGGCCuGGCgGGGGCcagcgCGggGUCCCg -3'
miRNA:   3'- aaCUGG-UCGgUCCUGa----GCuuCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 167371 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 167291 0.67 0.771124
Target:  5'- aUGGCCGGCgggaGGGGC-CGgcGCCUgCa -3'
miRNA:   3'- aACUGGUCGg---UCCUGaGCuuCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 165936 0.76 0.285742
Target:  5'- -aGGCC-GCCAGGAggcuCUCGuGGCCCCUg -3'
miRNA:   3'- aaCUGGuCGGUCCU----GAGCuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 163180 0.72 0.459011
Target:  5'- uUUGACCGGgCAGuGGCUUGGcuucuGCCCCUc -3'
miRNA:   3'- -AACUGGUCgGUC-CUGAGCUu----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 159331 0.66 0.789341
Target:  5'- -aGGCUGGCCGGcGuCUCGugcgccGCCUCCa -3'
miRNA:   3'- aaCUGGUCGGUC-CuGAGCuu----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 159270 0.69 0.654193
Target:  5'- --cGCC-GCCAcgcGGGcCUCGggGCCCUCg -3'
miRNA:   3'- aacUGGuCGGU---CCU-GAGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 158288 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.