miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 84545 0.65 0.82155
Target:  5'- -cGGCCAGCUgacggaugacgugaAGGAUgUGAGGgCCCUg -3'
miRNA:   3'- aaCUGGUCGG--------------UCCUGaGCUUCgGGGG- -5'
29067 3' -58.8 NC_006146.1 + 4516 0.65 0.82323
Target:  5'- -gGGCCAGCgGGGGgugaccauCUCGGugccggcAGCCgCCg -3'
miRNA:   3'- aaCUGGUCGgUCCU--------GAGCU-------UCGGgGG- -5'
29067 3' -58.8 NC_006146.1 + 145165 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 142087 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 127657 0.66 0.798248
Target:  5'- -aGGCCGcGCUGGcGC-CGAGGCaCCCCa -3'
miRNA:   3'- aaCUGGU-CGGUCcUGaGCUUCG-GGGG- -5'
29067 3' -58.8 NC_006146.1 + 105190 0.66 0.798248
Target:  5'- gUGACCggGGCCGGGGagccgGggGUgCCCg -3'
miRNA:   3'- aACUGG--UCGGUCCUgag--CuuCGgGGG- -5'
29067 3' -58.8 NC_006146.1 + 13107 0.66 0.798248
Target:  5'- -gGACCuGGCCcuguuuguGGACg-GggGCUCCCg -3'
miRNA:   3'- aaCUGG-UCGGu-------CCUGagCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 39770 0.66 0.798248
Target:  5'- -gGGCUuggagucaGGCUuGGGCcCGGAGCUCCCg -3'
miRNA:   3'- aaCUGG--------UCGGuCCUGaGCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 157356 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 154278 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 148243 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 151321 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 24284 0.66 0.815619
Target:  5'- gUGACCcuGGCCgGGGGCUgGAcGCuguuuCCCCu -3'
miRNA:   3'- aACUGG--UCGG-UCCUGAgCUuCG-----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 61922 0.66 0.815619
Target:  5'- -cGGCgGGCCaucaGGGGCUCcaGGGCCCUg -3'
miRNA:   3'- aaCUGgUCGG----UCCUGAGc-UUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 117174 0.66 0.814766
Target:  5'- -cGGCgCAGCCgcggcucccggagAGGACggGGAacguGCCCCCg -3'
miRNA:   3'- aaCUG-GUCGG-------------UCCUGagCUU----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 72425 0.66 0.80701
Target:  5'- cUGACCuuGGuCCGcGGACU-GAcccagagacuGGCCCCCg -3'
miRNA:   3'- aACUGG--UC-GGU-CCUGAgCU----------UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 11624 0.66 0.80701
Target:  5'- -cGACU-GCgAGGGCccCGAGGCCCgCg -3'
miRNA:   3'- aaCUGGuCGgUCCUGa-GCUUCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 72364 0.66 0.806141
Target:  5'- -gGACCGGCUGGcGGCgacgaaacccgagUCGGguggGGCCCCUc -3'
miRNA:   3'- aaCUGGUCGGUC-CUG-------------AGCU----UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 157477 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 154399 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.