miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 99680 1.1 0.001452
Target:  5'- gUUGACCAGCCAGGACUCGAAGCCCCCg -3'
miRNA:   3'- -AACUGGUCGGUCCUGAGCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 47521 0.8 0.152289
Target:  5'- -aGuuCCAGCCAGGuugCGggGCCCCCg -3'
miRNA:   3'- aaCu-GGUCGGUCCugaGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 121358 0.77 0.231304
Target:  5'- cUGGCCGGCguGGcCUCcgcccccagaGGAGCCCCCg -3'
miRNA:   3'- aACUGGUCGguCCuGAG----------CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 85425 0.76 0.272828
Target:  5'- -aGACCAGCCAGGcCgUGAAGgCCCUg -3'
miRNA:   3'- aaCUGGUCGGUCCuGaGCUUCgGGGG- -5'
29067 3' -58.8 NC_006146.1 + 165936 0.76 0.285742
Target:  5'- -aGGCC-GCCAGGAggcuCUCGuGGCCCCUg -3'
miRNA:   3'- aaCUGGuCGGUCCU----GAGCuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 61491 0.75 0.313007
Target:  5'- -gGAUCA-CCAGGGCUCcgagGAGGCCCCUg -3'
miRNA:   3'- aaCUGGUcGGUCCUGAG----CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 115123 0.75 0.320125
Target:  5'- cUGGCCAGCguGGuggcCUCGcuGCCCCUg -3'
miRNA:   3'- aACUGGUCGguCCu---GAGCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 109411 0.74 0.342199
Target:  5'- -cGGCCgucGGUCAGGGCcCGuuuGGCCCCCu -3'
miRNA:   3'- aaCUGG---UCGGUCCUGaGCu--UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 114312 0.74 0.349798
Target:  5'- -aGACCGGCgGcGGGCUCGgcGCCCggCCg -3'
miRNA:   3'- aaCUGGUCGgU-CCUGAGCuuCGGG--GG- -5'
29067 3' -58.8 NC_006146.1 + 70623 0.74 0.357515
Target:  5'- -aGGCCuGCCAGcccccgcuaggaGGCUCcauGGAGCCCCCg -3'
miRNA:   3'- aaCUGGuCGGUC------------CUGAG---CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 120061 0.73 0.389563
Target:  5'- gUGGCgCugcugcGCCGGGAagaCGGAGCCCCCa -3'
miRNA:   3'- aACUG-Gu-----CGGUCCUga-GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 152019 0.73 0.389563
Target:  5'- -aGAagcaCAGUgGGGGCU-GAGGCCCCCg -3'
miRNA:   3'- aaCUg---GUCGgUCCUGAgCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 123148 0.73 0.389563
Target:  5'- -aGGCCGuacucGCCAGGGCgcgCGAggaGGCCCCg -3'
miRNA:   3'- aaCUGGU-----CGGUCCUGa--GCU---UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 46340 0.73 0.395362
Target:  5'- cUGACCAGCCgguaggugAGGACcgcgucCGAcagcagcucccccaGGCCCCCg -3'
miRNA:   3'- aACUGGUCGG--------UCCUGa-----GCU--------------UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 67225 0.73 0.397864
Target:  5'- cUGGCCGGCCAGGcACagGAAGCCa-- -3'
miRNA:   3'- aACUGGUCGGUCC-UGagCUUCGGggg -5'
29067 3' -58.8 NC_006146.1 + 52982 0.73 0.406277
Target:  5'- -gGGCgGGgCGGGcguCUCGAGGCCCCUc -3'
miRNA:   3'- aaCUGgUCgGUCCu--GAGCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 52637 0.72 0.431296
Target:  5'- -gGACCgGGCCGagaacauGGGCUCu-GGCCCCCa -3'
miRNA:   3'- aaCUGG-UCGGU-------CCUGAGcuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 129460 0.72 0.432175
Target:  5'- -aGGCCAGCCccagaucuAGGAgccuagaaaaCUCGGGuGCCCCCc -3'
miRNA:   3'- aaCUGGUCGG--------UCCU----------GAGCUU-CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 133763 0.72 0.441019
Target:  5'- gUGACCGGCaCGGcacACUCGAGGCagcuaCCCa -3'
miRNA:   3'- aACUGGUCG-GUCc--UGAGCUUCGg----GGG- -5'
29067 3' -58.8 NC_006146.1 + 124169 0.72 0.441019
Target:  5'- cUGGCCAGCguGGccuccgcccgcCUCGGAGCCgCCg -3'
miRNA:   3'- aACUGGUCGguCCu----------GAGCUUCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.