miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 133763 0.72 0.441019
Target:  5'- gUGACCGGCaCGGcacACUCGAGGCagcuaCCCa -3'
miRNA:   3'- aACUGGUCG-GUCc--UGAGCUUCGg----GGG- -5'
29067 3' -58.8 NC_006146.1 + 156854 0.72 0.449965
Target:  5'- --aGCCAGCCGGcGCUUGcgccuGCCCCCg -3'
miRNA:   3'- aacUGGUCGGUCcUGAGCuu---CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 163180 0.72 0.459011
Target:  5'- uUUGACCGGgCAGuGGCUUGGcuucuGCCCCUc -3'
miRNA:   3'- -AACUGGUCgGUC-CUGAGCUu----CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 147105 0.72 0.468152
Target:  5'- -gGGCgAGCUGGGGCUCagcGGGCCCCa -3'
miRNA:   3'- aaCUGgUCGGUCCUGAGc--UUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 142897 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 149053 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 145975 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 155209 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 152131 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 158288 0.72 0.468152
Target:  5'- gUGGCCuGGCCuGGGCUgUGAGGCCUCg -3'
miRNA:   3'- aACUGG-UCGGuCCUGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 130045 0.72 0.477385
Target:  5'- -gGACCgcgAGCCGGGcCUCcaaGAGcGCCCCCu -3'
miRNA:   3'- aaCUGG---UCGGUCCuGAG---CUU-CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 42614 0.72 0.477385
Target:  5'- cUGACCgaAGCCuGGGGCUCGGccGCCgCCg -3'
miRNA:   3'- aACUGG--UCGG-UCCUGAGCUu-CGGgGG- -5'
29067 3' -58.8 NC_006146.1 + 168303 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 170166 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 169235 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 167371 0.71 0.486708
Target:  5'- --cGCCGGCCgGGGGCUgagGggGCUCCCg -3'
miRNA:   3'- aacUGGUCGG-UCCUGAg--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 115363 0.71 0.495172
Target:  5'- cUGGCCGGCguGGcggcggaGCUgGAGGCCCUg -3'
miRNA:   3'- aACUGGUCGguCC-------UGAgCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 125487 0.71 0.496116
Target:  5'- ---cCCGGCCGGGGcCUCGcgcuGGCCCaCCg -3'
miRNA:   3'- aacuGGUCGGUCCU-GAGCu---UCGGG-GG- -5'
29067 3' -58.8 NC_006146.1 + 704 0.71 0.501801
Target:  5'- cUGGCCcccGCCAGGccccggccccgccCUCgGGAGCCCCCu -3'
miRNA:   3'- aACUGGu--CGGUCCu------------GAG-CUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 1635 0.71 0.501801
Target:  5'- cUGGCCcccGCCAGGccccggccccgccCUCgGGAGCCCCCu -3'
miRNA:   3'- aACUGGu--CGGUCCu------------GAG-CUUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.