miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 13729 0.67 0.742921
Target:  5'- -aGGCCGGCCggaGGGACccCGGcAGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 13843 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 14215 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 15025 0.67 0.723636
Target:  5'- -gGACCuuCCAGGcC-CG-GGCCCCCa -3'
miRNA:   3'- aaCUGGucGGUCCuGaGCuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 15526 0.66 0.789341
Target:  5'- aUGAgCCAggcGCCGGGGCcuuUC-AGGCCCUCg -3'
miRNA:   3'- aACU-GGU---CGGUCCUG---AGcUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 16519 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 16639 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 16807 0.67 0.742921
Target:  5'- -aGGCCGGCCggaGGGACccCGGcAGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 16921 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 17293 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 17953 0.67 0.752427
Target:  5'- --aGCCcuCCAGGcCUcCGAGGCCCCa -3'
miRNA:   3'- aacUGGucGGUCCuGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 18103 0.67 0.723636
Target:  5'- -gGACCuuCCAGGcC-CG-GGCCCCCa -3'
miRNA:   3'- aaCUGGucGGUCCuGaGCuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 18604 0.66 0.789341
Target:  5'- aUGAgCCAggcGCCGGGGCcuuUC-AGGCCCUCg -3'
miRNA:   3'- aACU-GGU---CGGUCCUG---AGcUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 18874 0.7 0.563994
Target:  5'- -gGACguGCgGGGGC-CucAGCCCCCa -3'
miRNA:   3'- aaCUGguCGgUCCUGaGcuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 18991 0.66 0.780296
Target:  5'- -gGGCCggAGCCA-GACcccagUgGggGCCCCCu -3'
miRNA:   3'- aaCUGG--UCGGUcCUG-----AgCuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 19597 0.7 0.583883
Target:  5'- -aGGCCAGCCggaGGGACccCGGcagcccggguGGCCCCa -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU----------UCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 19717 0.71 0.504653
Target:  5'- -cGcCCGGCCAGaGACUCucccucgcggacaGggGCCuCCCa -3'
miRNA:   3'- aaCuGGUCGGUC-CUGAG-------------CuuCGG-GGG- -5'
29067 3' -58.8 NC_006146.1 + 19885 0.67 0.742921
Target:  5'- -aGGCCGGCCggaGGGACccCGGcAGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 19998 0.66 0.815619
Target:  5'- -aGGCCGGCCggaGGGACccCGGcGGCCCg- -3'
miRNA:   3'- aaCUGGUCGG---UCCUGa-GCU-UCGGGgg -5'
29067 3' -58.8 NC_006146.1 + 20371 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.