miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 3885 0.66 0.80701
Target:  5'- cUGGucUCGGCgAGGcccACcgaCGAGGCCCCCa -3'
miRNA:   3'- aACU--GGUCGgUCC---UGa--GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 98411 0.66 0.80701
Target:  5'- -aGGCgcugCAGCCAGGcACgggGAAGCgCCCa -3'
miRNA:   3'- aaCUG----GUCGGUCC-UGag-CUUCGgGGG- -5'
29067 3' -58.8 NC_006146.1 + 150299 0.66 0.80701
Target:  5'- -cGGugAGCCugaAGGACUCGuAGUCCUCg -3'
miRNA:   3'- aaCUggUCGG---UCCUGAGCuUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 72425 0.66 0.80701
Target:  5'- cUGACCuuGGuCCGcGGACU-GAcccagagacuGGCCCCCg -3'
miRNA:   3'- aACUGG--UC-GGU-CCUGAgCU----------UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 99814 0.66 0.80701
Target:  5'- --cACCGGCgAGGGggugUUCGggGCCUCg -3'
miRNA:   3'- aacUGGUCGgUCCU----GAGCuuCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 11624 0.66 0.80701
Target:  5'- -cGACU-GCgAGGGCccCGAGGCCCgCg -3'
miRNA:   3'- aaCUGGuCGgUCCUGa-GCUUCGGGgG- -5'
29067 3' -58.8 NC_006146.1 + 102852 0.66 0.806141
Target:  5'- gUUGG-CAGCCAGGGCagccgccaccuggUCGuggccGGGCCCCa -3'
miRNA:   3'- -AACUgGUCGGUCCUG-------------AGC-----UUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 49007 0.66 0.806141
Target:  5'- -aGACCGGCUAGGAgccgcagggcguuCUCcGggGCgcggCCCg -3'
miRNA:   3'- aaCUGGUCGGUCCU-------------GAG-CuuCGg---GGG- -5'
29067 3' -58.8 NC_006146.1 + 72364 0.66 0.806141
Target:  5'- -gGACCGGCUGGcGGCgacgaaacccgagUCGGguggGGCCCCUc -3'
miRNA:   3'- aaCUGGUCGGUC-CUG-------------AGCU----UCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 20371 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 69781 0.66 0.798248
Target:  5'- -cGugUAGCCGGGA-UCGAugauGCCCa- -3'
miRNA:   3'- aaCugGUCGGUCCUgAGCUu---CGGGgg -5'
29067 3' -58.8 NC_006146.1 + 23449 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 46158 0.66 0.798248
Target:  5'- -gGACCAGCCccAGGaACUCcggguGggGCCagagagcggCCCg -3'
miRNA:   3'- aaCUGGUCGG--UCC-UGAG-----CuuCGG---------GGG- -5'
29067 3' -58.8 NC_006146.1 + 157477 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 151321 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 148243 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 145165 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 142087 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 127657 0.66 0.798248
Target:  5'- -aGGCCGcGCUGGcGC-CGAGGCaCCCCa -3'
miRNA:   3'- aaCUGGU-CGGUCcUGaGCUUCG-GGGG- -5'
29067 3' -58.8 NC_006146.1 + 106744 0.66 0.798248
Target:  5'- ---cCCAGCCuGGcagACUcCGAGGCCCUg -3'
miRNA:   3'- aacuGGUCGGuCC---UGA-GCUUCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.