miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 3' -58.8 NC_006146.1 + 69781 0.66 0.798248
Target:  5'- -cGugUAGCCGGGA-UCGAugauGCCCa- -3'
miRNA:   3'- aaCugGUCGGUCCUgAGCUu---CGGGgg -5'
29067 3' -58.8 NC_006146.1 + 108955 0.66 0.798248
Target:  5'- aUGugCaccgucccguGGaCCAGGGCccUGGAGCCCCUg -3'
miRNA:   3'- aACugG----------UC-GGUCCUGa-GCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 157477 0.66 0.798248
Target:  5'- -cGGCUGGCCuGGGACcCGggGaggcaCCCUg -3'
miRNA:   3'- aaCUGGUCGG-UCCUGaGCuuCg----GGGG- -5'
29067 3' -58.8 NC_006146.1 + 39770 0.66 0.798248
Target:  5'- -gGGCUuggagucaGGCUuGGGCcCGGAGCUCCCg -3'
miRNA:   3'- aaCUGG--------UCGGuCCUGaGCUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 29605 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 46158 0.66 0.798248
Target:  5'- -gGACCAGCCccAGGaACUCcggguGggGCCagagagcggCCCg -3'
miRNA:   3'- aaCUGGUCGG--UCC-UGAG-----CuuCGG---------GGG- -5'
29067 3' -58.8 NC_006146.1 + 106744 0.66 0.798248
Target:  5'- ---cCCAGCCuGGcagACUcCGAGGCCCUg -3'
miRNA:   3'- aacuGGUCGGuCC---UGA-GCUUCGGGGg -5'
29067 3' -58.8 NC_006146.1 + 14215 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 128956 0.66 0.798248
Target:  5'- -cGACCAGgCgguuGGGAa--GAAcGCCCCCg -3'
miRNA:   3'- aaCUGGUCgG----UCCUgagCUU-CGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 26527 0.66 0.798248
Target:  5'- -aGGCCAGCCc-GACccccaGccGCCCCCa -3'
miRNA:   3'- aaCUGGUCGGucCUGag---CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 157356 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 141966 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 145044 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 148122 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 94677 0.66 0.797364
Target:  5'- -cGACguaGGCCAGGauuuccggcgagaGCUCGAGGCCguaCUCg -3'
miRNA:   3'- aaCUGg--UCGGUCC-------------UGAGCUUCGG---GGG- -5'
29067 3' -58.8 NC_006146.1 + 151200 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 154278 0.66 0.797364
Target:  5'- cUGGCCGGgCGGGcggggacggggcuGCUCGG-GUCCCUu -3'
miRNA:   3'- aACUGGUCgGUCC-------------UGAGCUuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 109381 0.66 0.796478
Target:  5'- -aGGCCAGguuucugaaugaCAGGGCggcaGggGCCUCCu -3'
miRNA:   3'- aaCUGGUCg-----------GUCCUGag--CuuCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 27838 0.66 0.789341
Target:  5'- aUGAgCCAggcGCCGGGGCcuuUC-AGGCCCUCg -3'
miRNA:   3'- aACU-GGU---CGGUCCUG---AGcUUCGGGGG- -5'
29067 3' -58.8 NC_006146.1 + 116661 0.66 0.789341
Target:  5'- cUGACCGGggccgcCCAGaGGCUCu--GCUCCCg -3'
miRNA:   3'- aACUGGUC------GGUC-CUGAGcuuCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.