Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29067 | 5' | -54.8 | NC_006146.1 | + | 99580 | 0.66 | 0.93997 |
Target: 5'- gGAGGuagaagaCGGGCUuggGGcCGCGGUGCu -3' miRNA: 3'- aCUCCuagaa--GUCCGA---CU-GCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 99714 | 1.12 | 0.002707 |
Target: 5'- gUGAGGAUCUUCAGGCUGACGCGGUGCu -3' miRNA: 3'- -ACUCCUAGAAGUCCGACUGCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 100231 | 0.69 | 0.850972 |
Target: 5'- cUGAGuGAUCaUCAccucccGCUGGCGgGGUGUg -3' miRNA: 3'- -ACUC-CUAGaAGUc-----CGACUGCgCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 114443 | 0.68 | 0.866389 |
Target: 5'- cUGGGGAUCUUCGGacuuggagauCUGGCccaGCaGGUGCu -3' miRNA: 3'- -ACUCCUAGAAGUCc---------GACUG---CG-CCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 117828 | 0.69 | 0.826369 |
Target: 5'- gGAGGAgg---AGGCgGugGCGGUGUu -3' miRNA: 3'- aCUCCUagaagUCCGaCugCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 127392 | 0.66 | 0.937101 |
Target: 5'- gGAGGuGUCUUgGGGCUGggccccgccgccggaGC-CGGUGUc -3' miRNA: 3'- aCUCC-UAGAAgUCCGAC---------------UGcGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 133634 | 0.72 | 0.714305 |
Target: 5'- aUGGGGA-CUUggcUGGGCuuUGAUGUGGUGCa -3' miRNA: 3'- -ACUCCUaGAA---GUCCG--ACUGCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 141953 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 142168 | 0.72 | 0.704288 |
Target: 5'- uUGGGGAUgaUguGGCUGcUGCuGGUGCu -3' miRNA: 3'- -ACUCCUAgaAguCCGACuGCG-CCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 145031 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 148109 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 151187 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 154265 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 155550 | 0.66 | 0.953037 |
Target: 5'- aGAGGGcgUUggagcCGGGCUcGCGCGGgGCg -3' miRNA: 3'- aCUCCU--AGaa---GUCCGAcUGCGCCaCG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 157343 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 159237 | 0.7 | 0.800171 |
Target: 5'- gUGGGGGgc--CAGGCUGGCauuauauCGGUGCa -3' miRNA: 3'- -ACUCCUagaaGUCCGACUGc------GCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 163594 | 0.71 | 0.743894 |
Target: 5'- uUGGuGGUCUUUgagGGGUcuUGugGCGGUGCu -3' miRNA: 3'- -ACUcCUAGAAG---UCCG--ACugCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 167508 | 0.69 | 0.858783 |
Target: 5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3' miRNA: 3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 168440 | 0.69 | 0.858783 |
Target: 5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3' miRNA: 3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 169372 | 0.69 | 0.858783 |
Target: 5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3' miRNA: 3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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