miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 5' -54.8 NC_006146.1 + 12897 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 15974 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 19052 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 22130 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 25208 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 28286 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 34019 0.74 0.591997
Target:  5'- gGGGGGUCggggCAGGCgGGCGUGGUc- -3'
miRNA:   3'- aCUCCUAGaa--GUCCGaCUGCGCCAcg -5'
29067 5' -54.8 NC_006146.1 + 39879 0.68 0.873783
Target:  5'- gGAGGAggCUg-AGGCUGA-GCGGccUGCg -3'
miRNA:   3'- aCUCCUa-GAagUCCGACUgCGCC--ACG- -5'
29067 5' -54.8 NC_006146.1 + 40262 0.69 0.850972
Target:  5'- -uGGGAUCcguagUAGGgaGGCGCGG-GCg -3'
miRNA:   3'- acUCCUAGaa---GUCCgaCUGCGCCaCG- -5'
29067 5' -54.8 NC_006146.1 + 44518 0.7 0.781928
Target:  5'- cGGGG--UUUCAGGCUGACGggcggaggaCGGUGg -3'
miRNA:   3'- aCUCCuaGAAGUCCGACUGC---------GCCACg -5'
29067 5' -54.8 NC_006146.1 + 49582 0.66 0.944561
Target:  5'- cUGAGGccagggUgGGGCUGugGaUGGUGUg -3'
miRNA:   3'- -ACUCCuaga--AgUCCGACugC-GCCACG- -5'
29067 5' -54.8 NC_006146.1 + 50878 0.7 0.7726
Target:  5'- -cGGGGUCUgugccCGGaCUGGCGCgGGUGCg -3'
miRNA:   3'- acUCCUAGAa----GUCcGACUGCG-CCACG- -5'
29067 5' -54.8 NC_006146.1 + 51186 0.84 0.167118
Target:  5'- aGGGGGUCUgCGGGCUGGCGUGGUacaggGCa -3'
miRNA:   3'- aCUCCUAGAaGUCCGACUGCGCCA-----CG- -5'
29067 5' -54.8 NC_006146.1 + 61397 0.8 0.307351
Target:  5'- aUGGGGGUUguccCAGGCUGGCuGCGGUGg -3'
miRNA:   3'- -ACUCCUAGaa--GUCCGACUG-CGCCACg -5'
29067 5' -54.8 NC_006146.1 + 69404 0.68 0.890632
Target:  5'- uUGAGGAacacggUCUgcucgccaaaguuggUCAGGCUGACGCuGaccccaccucUGCg -3'
miRNA:   3'- -ACUCCU------AGA---------------AGUCCGACUGCGcC----------ACG- -5'
29067 5' -54.8 NC_006146.1 + 70594 0.69 0.834758
Target:  5'- gGAGGAUgUggAGacuCUGAuCGCGGUGCa -3'
miRNA:   3'- aCUCCUAgAagUCc--GACU-GCGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 88919 0.67 0.924764
Target:  5'- cUGGGGcUCUUguGGCUGAgGCuGagGCu -3'
miRNA:   3'- -ACUCCuAGAAguCCGACUgCGcCa-CG- -5'
29067 5' -54.8 NC_006146.1 + 92903 0.67 0.919216
Target:  5'- gGAGGAUCacugUGGGUacuugggGAUGUGGUGUg -3'
miRNA:   3'- aCUCCUAGaa--GUCCGa------CUGCGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 93317 0.66 0.944561
Target:  5'- -aAGGAaCaUCAGGCgGAUGCGGUuucaGCc -3'
miRNA:   3'- acUCCUaGaAGUCCGaCUGCGCCA----CG- -5'
29067 5' -54.8 NC_006146.1 + 94719 0.78 0.368103
Target:  5'- cGAGGGUCUUCaugAGGUgcccgaacugGACGuCGGUGCa -3'
miRNA:   3'- aCUCCUAGAAG---UCCGa---------CUGC-GCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.