Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29067 | 5' | -54.8 | NC_006146.1 | + | 99714 | 1.12 | 0.002707 |
Target: 5'- gUGAGGAUCUUCAGGCUGACGCGGUGCu -3' miRNA: 3'- -ACUCCUAGAAGUCCGACUGCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 51186 | 0.84 | 0.167118 |
Target: 5'- aGGGGGUCUgCGGGCUGGCGUGGUacaggGCa -3' miRNA: 3'- aCUCCUAGAaGUCCGACUGCGCCA-----CG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 61397 | 0.8 | 0.307351 |
Target: 5'- aUGGGGGUUguccCAGGCUGGCuGCGGUGg -3' miRNA: 3'- -ACUCCUAGaa--GUCCGACUG-CGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 94719 | 0.78 | 0.368103 |
Target: 5'- cGAGGGUCUUCaugAGGUgcccgaacugGACGuCGGUGCa -3' miRNA: 3'- aCUCCUAGAAG---UCCGa---------CUGC-GCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 34019 | 0.74 | 0.591997 |
Target: 5'- gGGGGGUCggggCAGGCgGGCGUGGUc- -3' miRNA: 3'- aCUCCUAGaa--GUCCGaCUGCGCCAcg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 142168 | 0.72 | 0.704288 |
Target: 5'- uUGGGGAUgaUguGGCUGcUGCuGGUGCu -3' miRNA: 3'- -ACUCCUAgaAguCCGACuGCG-CCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 133634 | 0.72 | 0.714305 |
Target: 5'- aUGGGGA-CUUggcUGGGCuuUGAUGUGGUGCa -3' miRNA: 3'- -ACUCCUaGAA---GUCCG--ACUGCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 163594 | 0.71 | 0.743894 |
Target: 5'- uUGGuGGUCUUUgagGGGUcuUGugGCGGUGCu -3' miRNA: 3'- -ACUcCUAGAAG---UCCG--ACugCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 50878 | 0.7 | 0.7726 |
Target: 5'- -cGGGGUCUgugccCGGaCUGGCGCgGGUGCg -3' miRNA: 3'- acUCCUAGAa----GUCcGACUGCG-CCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 44518 | 0.7 | 0.781928 |
Target: 5'- cGGGG--UUUCAGGCUGACGggcggaggaCGGUGg -3' miRNA: 3'- aCUCCuaGAAGUCCGACUGC---------GCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 159237 | 0.7 | 0.800171 |
Target: 5'- gUGGGGGgc--CAGGCUGGCauuauauCGGUGCa -3' miRNA: 3'- -ACUCCUagaaGUCCGACUGc------GCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 117828 | 0.69 | 0.826369 |
Target: 5'- gGAGGAgg---AGGCgGugGCGGUGUu -3' miRNA: 3'- aCUCCUagaagUCCGaCugCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 70594 | 0.69 | 0.834758 |
Target: 5'- gGAGGAUgUggAGacuCUGAuCGCGGUGCa -3' miRNA: 3'- aCUCCUAgAagUCc--GACU-GCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 28286 | 0.69 | 0.834758 |
Target: 5'- --cGGGUCUggGGGuCUGugGUGGUGa -3' miRNA: 3'- acuCCUAGAagUCC-GACugCGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 25208 | 0.69 | 0.834758 |
Target: 5'- --cGGGUCUggGGGuCUGugGUGGUGa -3' miRNA: 3'- acuCCUAGAagUCC-GACugCGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 19052 | 0.69 | 0.834758 |
Target: 5'- --cGGGUCUggGGGuCUGugGUGGUGa -3' miRNA: 3'- acuCCUAGAagUCC-GACugCGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 15974 | 0.69 | 0.834758 |
Target: 5'- --cGGGUCUggGGGuCUGugGUGGUGa -3' miRNA: 3'- acuCCUAGAagUCC-GACugCGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 12897 | 0.69 | 0.834758 |
Target: 5'- --cGGGUCUggGGGuCUGugGUGGUGa -3' miRNA: 3'- acuCCUAGAagUCC-GACugCGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 22130 | 0.69 | 0.834758 |
Target: 5'- --cGGGUCUggGGGuCUGugGUGGUGa -3' miRNA: 3'- acuCCUAGAagUCC-GACugCGCCACg -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 40262 | 0.69 | 0.850972 |
Target: 5'- -uGGGAUCcguagUAGGgaGGCGCGG-GCg -3' miRNA: 3'- acUCCUAGaa---GUCCgaCUGCGCCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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