miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29067 5' -54.8 NC_006146.1 + 99714 1.12 0.002707
Target:  5'- gUGAGGAUCUUCAGGCUGACGCGGUGCu -3'
miRNA:   3'- -ACUCCUAGAAGUCCGACUGCGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 170303 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 69404 0.68 0.890632
Target:  5'- uUGAGGAacacggUCUgcucgccaaaguuggUCAGGCUGACGCuGaccccaccucUGCg -3'
miRNA:   3'- -ACUCCU------AGA---------------AGUCCGACUGCGcC----------ACG- -5'
29067 5' -54.8 NC_006146.1 + 155550 0.66 0.953037
Target:  5'- aGAGGGcgUUggagcCGGGCUcGCGCGGgGCg -3'
miRNA:   3'- aCUCCU--AGaa---GUCCGAcUGCGCCaCG- -5'
29067 5' -54.8 NC_006146.1 + 142168 0.72 0.704288
Target:  5'- uUGGGGAUgaUguGGCUGcUGCuGGUGCu -3'
miRNA:   3'- -ACUCCUAgaAguCCGACuGCG-CCACG- -5'
29067 5' -54.8 NC_006146.1 + 44518 0.7 0.781928
Target:  5'- cGGGG--UUUCAGGCUGACGggcggaggaCGGUGg -3'
miRNA:   3'- aCUCCuaGAAGUCCGACUGC---------GCCACg -5'
29067 5' -54.8 NC_006146.1 + 12897 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 15974 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 25208 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 167508 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 22130 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 61397 0.8 0.307351
Target:  5'- aUGGGGGUUguccCAGGCUGGCuGCGGUGg -3'
miRNA:   3'- -ACUCCUAGaa--GUCCGACUG-CGCCACg -5'
29067 5' -54.8 NC_006146.1 + 168440 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 94719 0.78 0.368103
Target:  5'- cGAGGGUCUUCaugAGGUgcccgaacugGACGuCGGUGCa -3'
miRNA:   3'- aCUCCUAGAAG---UCCGa---------CUGC-GCCACG- -5'
29067 5' -54.8 NC_006146.1 + 19052 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5'
29067 5' -54.8 NC_006146.1 + 169372 0.69 0.858783
Target:  5'- aGAGGGggca-GGGCUGGCGcCGGgccGCg -3'
miRNA:   3'- aCUCCUagaagUCCGACUGC-GCCa--CG- -5'
29067 5' -54.8 NC_006146.1 + 99580 0.66 0.93997
Target:  5'- gGAGGuagaagaCGGGCUuggGGcCGCGGUGCu -3'
miRNA:   3'- aCUCCuagaa--GUCCGA---CU-GCGCCACG- -5'
29067 5' -54.8 NC_006146.1 + 34019 0.74 0.591997
Target:  5'- gGGGGGUCggggCAGGCgGGCGUGGUc- -3'
miRNA:   3'- aCUCCUAGaa--GUCCGaCUGCGCCAcg -5'
29067 5' -54.8 NC_006146.1 + 159237 0.7 0.800171
Target:  5'- gUGGGGGgc--CAGGCUGGCauuauauCGGUGCa -3'
miRNA:   3'- -ACUCCUagaaGUCCGACUGc------GCCACG- -5'
29067 5' -54.8 NC_006146.1 + 28286 0.69 0.834758
Target:  5'- --cGGGUCUggGGGuCUGugGUGGUGa -3'
miRNA:   3'- acuCCUAGAagUCC-GACugCGCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.