Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29067 | 5' | -54.8 | NC_006146.1 | + | 51186 | 0.84 | 0.167118 |
Target: 5'- aGGGGGUCUgCGGGCUGGCGUGGUacaggGCa -3' miRNA: 3'- aCUCCUAGAaGUCCGACUGCGCCA-----CG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 114443 | 0.68 | 0.866389 |
Target: 5'- cUGGGGAUCUUCGGacuuggagauCUGGCccaGCaGGUGCu -3' miRNA: 3'- -ACUCCUAGAAGUCc---------GACUG---CG-CCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 100231 | 0.69 | 0.850972 |
Target: 5'- cUGAGuGAUCaUCAccucccGCUGGCGgGGUGUg -3' miRNA: 3'- -ACUC-CUAGaAGUc-----CGACUGCgCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 40262 | 0.69 | 0.850972 |
Target: 5'- -uGGGAUCcguagUAGGgaGGCGCGG-GCg -3' miRNA: 3'- acUCCUAGaa---GUCCgaCUGCGCCaCG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 70594 | 0.69 | 0.834758 |
Target: 5'- gGAGGAUgUggAGacuCUGAuCGCGGUGCa -3' miRNA: 3'- aCUCCUAgAagUCc--GACU-GCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 117828 | 0.69 | 0.826369 |
Target: 5'- gGAGGAgg---AGGCgGugGCGGUGUu -3' miRNA: 3'- aCUCCUagaagUCCGaCugCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 50878 | 0.7 | 0.7726 |
Target: 5'- -cGGGGUCUgugccCGGaCUGGCGCgGGUGCg -3' miRNA: 3'- acUCCUAGAa----GUCcGACUGCG-CCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 163594 | 0.71 | 0.743894 |
Target: 5'- uUGGuGGUCUUUgagGGGUcuUGugGCGGUGCu -3' miRNA: 3'- -ACUcCUAGAAG---UCCG--ACugCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 133634 | 0.72 | 0.714305 |
Target: 5'- aUGGGGA-CUUggcUGGGCuuUGAUGUGGUGCa -3' miRNA: 3'- -ACUCCUaGAA---GUCCG--ACUGCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 39879 | 0.68 | 0.873783 |
Target: 5'- gGAGGAggCUg-AGGCUGA-GCGGccUGCg -3' miRNA: 3'- aCUCCUa-GAagUCCGACUgCGCC--ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 92903 | 0.67 | 0.919216 |
Target: 5'- gGAGGAUCacugUGGGUacuugggGAUGUGGUGUg -3' miRNA: 3'- aCUCCUAGaa--GUCCGa------CUGCGCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 88919 | 0.67 | 0.924764 |
Target: 5'- cUGGGGcUCUUguGGCUGAgGCuGagGCu -3' miRNA: 3'- -ACUCCuAGAAguCCGACUgCGcCa-CG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 154265 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 151187 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 148109 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 145031 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 141953 | 0.66 | 0.948916 |
Target: 5'- cGAGGGagagucUCUggccgggCGGGCgggGACGgGGcUGCu -3' miRNA: 3'- aCUCCU------AGAa------GUCCGa--CUGCgCC-ACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 93317 | 0.66 | 0.944561 |
Target: 5'- -aAGGAaCaUCAGGCgGAUGCGGUuucaGCc -3' miRNA: 3'- acUCCUaGaAGUCCGaCUGCGCCA----CG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 49582 | 0.66 | 0.944561 |
Target: 5'- cUGAGGccagggUgGGGCUGugGaUGGUGUg -3' miRNA: 3'- -ACUCCuaga--AgUCCGACugC-GCCACG- -5' |
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29067 | 5' | -54.8 | NC_006146.1 | + | 127392 | 0.66 | 0.937101 |
Target: 5'- gGAGGuGUCUUgGGGCUGggccccgccgccggaGC-CGGUGUc -3' miRNA: 3'- aCUCC-UAGAAgUCCGAC---------------UGcGCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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