miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 3' -53.2 NC_006146.1 + 169671 0.66 0.978632
Target:  5'- -gUGGCGGGCgcgcgUGGCC-CGCccCCGg -3'
miRNA:   3'- gaACCGCCUGaa---AUCGGaGUGcaGGU- -5'
29073 3' -53.2 NC_006146.1 + 168739 0.66 0.978632
Target:  5'- -gUGGCGGGCgcgcgUGGCC-CGCccCCGg -3'
miRNA:   3'- gaACCGCCUGaa---AUCGGaGUGcaGGU- -5'
29073 3' -53.2 NC_006146.1 + 168471 0.69 0.887593
Target:  5'- -gUGcGCaGAUcc-GGCCUCACGUCCAc -3'
miRNA:   3'- gaAC-CGcCUGaaaUCGGAGUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 167807 0.66 0.978632
Target:  5'- -gUGGCGGGCgcgcgUGGCC-CGCccCCGg -3'
miRNA:   3'- gaACCGCCUGaa---AUCGGaGUGcaGGU- -5'
29073 3' -53.2 NC_006146.1 + 160137 0.71 0.825084
Target:  5'- --cGGCGGACUUUGGCaggCugG-CCu -3'
miRNA:   3'- gaaCCGCCUGAAAUCGga-GugCaGGu -5'
29073 3' -53.2 NC_006146.1 + 157429 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 155869 0.67 0.957392
Target:  5'- --cGGCGGGCccUGGCCagGCGcCCc -3'
miRNA:   3'- gaaCCGCCUGaaAUCGGagUGCaGGu -5'
29073 3' -53.2 NC_006146.1 + 154890 0.67 0.960718
Target:  5'- --cGGgGGGCag-GGCCUCgcccgggcugaccGCGUCCGc -3'
miRNA:   3'- gaaCCgCCUGaaaUCGGAG-------------UGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 154351 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 152028 0.71 0.825084
Target:  5'- -gUGG-GGGCUgaGGCCcccgCACGUCCAc -3'
miRNA:   3'- gaACCgCCUGAaaUCGGa---GUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 151273 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 148195 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 145117 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 142039 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 120972 0.67 0.951014
Target:  5'- --cGGCGGACguccgggaccgagUGGCCUCgGCGgccUCCGa -3'
miRNA:   3'- gaaCCGCCUGaa-----------AUCGGAG-UGC---AGGU- -5'
29073 3' -53.2 NC_006146.1 + 120769 0.68 0.930304
Target:  5'- -cUGGCGGc-----GCCUCAUGUCCc -3'
miRNA:   3'- gaACCGCCugaaauCGGAGUGCAGGu -5'
29073 3' -53.2 NC_006146.1 + 118892 0.66 0.978632
Target:  5'- ---cGCGGACU---GCCUCAgGUUCGa -3'
miRNA:   3'- gaacCGCCUGAaauCGGAGUgCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 111286 0.7 0.857235
Target:  5'- cCUUGGUGGACgcgUUGGCgUaaaauggguagaaUGCGUCCGa -3'
miRNA:   3'- -GAACCGCCUGa--AAUCGgA-------------GUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 110162 0.7 0.864216
Target:  5'- uCUUGGCGGAUcucuguccagGGCCUCAgCG-CCGg -3'
miRNA:   3'- -GAACCGCCUGaaa-------UCGGAGU-GCaGGU- -5'
29073 3' -53.2 NC_006146.1 + 108699 0.66 0.976215
Target:  5'- --cGGCgcaGGGCuUUUAGCUUCugGcUCCGu -3'
miRNA:   3'- gaaCCG---CCUG-AAAUCGGAGugC-AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.