miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 136841 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135541 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 129515 0.67 0.576658
Target:  5'- cUGCGGguUCGUGGAGc--GGCCGgaUGCCc -3'
miRNA:   3'- -ACGCC--AGCACCUCccuCCGGC--ACGGu -5'
29073 5' -62.7 NC_006146.1 + 157541 0.67 0.576658
Target:  5'- gGUGGUCGcgGuGAGGGAGGagGUGgCCu -3'
miRNA:   3'- aCGCCAGCa-C-CUCCCUCCggCAC-GGu -5'
29073 5' -62.7 NC_006146.1 + 135169 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135262 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137213 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137120 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136934 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136563 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136748 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136284 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135634 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135448 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136656 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135819 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135912 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136005 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136098 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136191 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.