miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 70548 0.66 0.615408
Target:  5'- gGCGGUgGUGGGguauauGGGuuguGGGCauCGUGCCc -3'
miRNA:   3'- aCGCCAgCACCU------CCC----UCCG--GCACGGu -5'
29073 5' -62.7 NC_006146.1 + 75254 0.69 0.438072
Target:  5'- gGCGGgCGUGGggugcacGGGGAuGGCCGaggaGCCGa -3'
miRNA:   3'- aCGCCaGCACC-------UCCCU-CCGGCa---CGGU- -5'
29073 5' -62.7 NC_006146.1 + 91099 0.68 0.492051
Target:  5'- cUGCGGcagUGgcagcGGAGGGAGGUgaggGUGCCGa -3'
miRNA:   3'- -ACGCCa--GCa----CCUCCCUCCGg---CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 93687 0.67 0.547949
Target:  5'- -uCGGUgGUGGAGgcauaguccaGGAGGCCGUGg-- -3'
miRNA:   3'- acGCCAgCACCUC----------CCUCCGGCACggu -5'
29073 5' -62.7 NC_006146.1 + 104386 1.08 0.00098
Target:  5'- uUGCGGUCGUGGAGGGAGGCCGUGCCAa -3'
miRNA:   3'- -ACGCCAGCACCUCCCUCCGGCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 109275 0.68 0.519705
Target:  5'- gUGCuucaGGUCGUagcugGGAGGGAucucggccccGGCCGcgGCCGc -3'
miRNA:   3'- -ACG----CCAGCA-----CCUCCCU----------CCGGCa-CGGU- -5'
29073 5' -62.7 NC_006146.1 + 122216 0.73 0.263748
Target:  5'- aGCGG-CGgGcGAGGGAGGCCGgcgaagcauggGCCAg -3'
miRNA:   3'- aCGCCaGCaC-CUCCCUCCGGCa----------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 124148 0.69 0.438929
Target:  5'- cGgGGUCG-GGAGGcGAGGaCCcugGCCAg -3'
miRNA:   3'- aCgCCAGCaCCUCC-CUCC-GGca-CGGU- -5'
29073 5' -62.7 NC_006146.1 + 128737 0.66 0.625139
Target:  5'- ----cUCG-GGAGGGGGGugaguCCGUGCCAg -3'
miRNA:   3'- acgccAGCaCCUCCCUCC-----GGCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 129515 0.67 0.576658
Target:  5'- cUGCGGguUCGUGGAGc--GGCCGgaUGCCc -3'
miRNA:   3'- -ACGCC--AGCACCUCccuCCGGC--ACGGu -5'
29073 5' -62.7 NC_006146.1 + 135169 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135262 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135355 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135448 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135541 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135634 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135819 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 135912 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136005 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 136098 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.