miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 14792 0.66 0.605687
Target:  5'- gGCGGcUGaggGGaAGGaGAGGCCG-GCCGg -3'
miRNA:   3'- aCGCCaGCa--CC-UCC-CUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 15282 0.69 0.482984
Target:  5'- aGCGGcugaaccggagCGagggGGAGGaGGGGCCGgagGCCAg -3'
miRNA:   3'- aCGCCa----------GCa---CCUCC-CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 19713 0.68 0.501196
Target:  5'- -cUGGUCcacgGGGGaGGAGGCCG-GCCGc -3'
miRNA:   3'- acGCCAGca--CCUC-CCUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 26224 0.66 0.654337
Target:  5'- --aGGUCGUGGAGaagcaccGAGGCCaaaauugGCCAg -3'
miRNA:   3'- acgCCAGCACCUCc------CUCCGGca-----CGGU- -5'
29073 5' -62.7 NC_006146.1 + 40138 0.68 0.492051
Target:  5'- ---cGUC-UGGAGGGGGGCUG-GCCAu -3'
miRNA:   3'- acgcCAGcACCUCCCUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 40282 0.66 0.664046
Target:  5'- cGCGGgc--GGAGGcgggccaaaGAGGCCGggcagGCCAa -3'
miRNA:   3'- aCGCCagcaCCUCC---------CUCCGGCa----CGGU- -5'
29073 5' -62.7 NC_006146.1 + 41055 0.68 0.542258
Target:  5'- gGCGGcCcugggggccucgggGUGGAGGGAGGCCagggacagcgagggGaGCCAg -3'
miRNA:   3'- aCGCCaG--------------CACCUCCCUCCGG--------------CaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 44017 0.7 0.381321
Target:  5'- cGCGG-CGgGGAGGGGgcGGCCGaggGCCc -3'
miRNA:   3'- aCGCCaGCaCCUCCCU--CCGGCa--CGGu -5'
29073 5' -62.7 NC_006146.1 + 44308 0.7 0.413624
Target:  5'- -cCGGUaGUGGGGGcuGGGGCCGUGgCAg -3'
miRNA:   3'- acGCCAgCACCUCC--CUCCGGCACgGU- -5'
29073 5' -62.7 NC_006146.1 + 45068 0.68 0.538476
Target:  5'- gGCGGcugaggugccUCGUGGggagAGGGAGgguGCCG-GCCAu -3'
miRNA:   3'- aCGCC----------AGCACC----UCCCUC---CGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 45336 0.66 0.664046
Target:  5'- uUGCGGggauucGGGGGAGGCCGguacCCAa -3'
miRNA:   3'- -ACGCCagcac-CUCCCUCCGGCac--GGU- -5'
29073 5' -62.7 NC_006146.1 + 48009 0.66 0.605687
Target:  5'- gGCGGgaggCuUGGcgGGGGAGGCaCGgcggGCCGg -3'
miRNA:   3'- aCGCCa---GcACC--UCCCUCCG-GCa---CGGU- -5'
29073 5' -62.7 NC_006146.1 + 50032 0.66 0.634876
Target:  5'- cGgGGUCGaggcgcaGGAGGGAGGCgcaGU-CCAg -3'
miRNA:   3'- aCgCCAGCa------CCUCCCUCCGg--CAcGGU- -5'
29073 5' -62.7 NC_006146.1 + 51714 0.68 0.528121
Target:  5'- gUGuCGGUgGUGGAggacaugGGGAGGCgGcGCCc -3'
miRNA:   3'- -AC-GCCAgCACCU-------CCCUCCGgCaCGGu -5'
29073 5' -62.7 NC_006146.1 + 51834 0.81 0.07828
Target:  5'- gGCGG-CGUGGAGGGGGGCuCGggGCCu -3'
miRNA:   3'- aCGCCaGCACCUCCCUCCG-GCa-CGGu -5'
29073 5' -62.7 NC_006146.1 + 53450 0.66 0.634876
Target:  5'- gGCGGUgGUGucugcccGGGAGGCgcggGUGCCu -3'
miRNA:   3'- aCGCCAgCACcu-----CCCUCCGg---CACGGu -5'
29073 5' -62.7 NC_006146.1 + 55028 0.67 0.547949
Target:  5'- gGCGGgCGggaUGGGGGucGGGGCCGggGCCu -3'
miRNA:   3'- aCGCCaGC---ACCUCC--CUCCGGCa-CGGu -5'
29073 5' -62.7 NC_006146.1 + 56237 0.68 0.52906
Target:  5'- aGCGGguccgCG-GGGGcGGAGGCgGgGCCGu -3'
miRNA:   3'- aCGCCa----GCaCCUC-CCUCCGgCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 61827 0.66 0.654337
Target:  5'- gGCGcUgGUGGGGGcaguGGGGCUgGUGCCGg -3'
miRNA:   3'- aCGCcAgCACCUCC----CUCCGG-CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 62913 0.67 0.586306
Target:  5'- uUGgGGUguuuucagaUGcGGAGGGugAGGCUGUGCCu -3'
miRNA:   3'- -ACgCCA---------GCaCCUCCC--UCCGGCACGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.