miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 104386 1.08 0.00098
Target:  5'- uUGCGGUCGUGGAGGGAGGCCGUGCCAa -3'
miRNA:   3'- -ACGCCAGCACCUCCCUCCGGCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 51834 0.81 0.07828
Target:  5'- gGCGG-CGUGGAGGGGGGCuCGggGCCu -3'
miRNA:   3'- aCGCCaGCACCUCCCUCCG-GCa-CGGu -5'
29073 5' -62.7 NC_006146.1 + 122216 0.73 0.263748
Target:  5'- aGCGG-CGgGcGAGGGAGGCCGgcgaagcauggGCCAg -3'
miRNA:   3'- aCGCCaGCaC-CUCCCUCCGGCa----------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 162106 0.73 0.288498
Target:  5'- cGCGGUUG-GGAaagugugcacuGGGGGGCCGUcCCAc -3'
miRNA:   3'- aCGCCAGCaCCU-----------CCCUCCGGCAcGGU- -5'
29073 5' -62.7 NC_006146.1 + 149595 0.72 0.294964
Target:  5'- gGCGG-CG-GGAGaGGAGGCUG-GCCGc -3'
miRNA:   3'- aCGCCaGCaCCUC-CCUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 166017 0.71 0.350746
Target:  5'- aUGCGGUUGUGGGcaucGGGGGuGCCuGUGgCCc -3'
miRNA:   3'- -ACGCCAGCACCU----CCCUC-CGG-CAC-GGu -5'
29073 5' -62.7 NC_006146.1 + 44017 0.7 0.381321
Target:  5'- cGCGG-CGgGGAGGGGgcGGCCGaggGCCc -3'
miRNA:   3'- aCGCCaGCaCCUCCCU--CCGGCa--CGGu -5'
29073 5' -62.7 NC_006146.1 + 44308 0.7 0.413624
Target:  5'- -cCGGUaGUGGGGGcuGGGGCCGUGgCAg -3'
miRNA:   3'- acGCCAgCACCUCC--CUCCGGCACgGU- -5'
29073 5' -62.7 NC_006146.1 + 75254 0.69 0.438072
Target:  5'- gGCGGgCGUGGggugcacGGGGAuGGCCGaggaGCCGa -3'
miRNA:   3'- aCGCCaGCACC-------UCCCU-CCGGCa---CGGU- -5'
29073 5' -62.7 NC_006146.1 + 124148 0.69 0.438929
Target:  5'- cGgGGUCG-GGAGGcGAGGaCCcugGCCAg -3'
miRNA:   3'- aCgCCAGCaCCUCC-CUCC-GGca-CGGU- -5'
29073 5' -62.7 NC_006146.1 + 141723 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 144801 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 147879 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 150957 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 154035 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 157113 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 15282 0.69 0.482984
Target:  5'- aGCGGcugaaccggagCGagggGGAGGaGGGGCCGgagGCCAg -3'
miRNA:   3'- aCGCCa----------GCa---CCUCC-CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137994 0.69 0.486601
Target:  5'- gGCGGg-GUGGGGGGuGcGCCcccagccggacccugGUGCCAg -3'
miRNA:   3'- aCGCCagCACCUCCCuC-CGG---------------CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 91099 0.68 0.492051
Target:  5'- cUGCGGcagUGgcagcGGAGGGAGGUgaggGUGCCGa -3'
miRNA:   3'- -ACGCCa--GCa----CCUCCCUCCGg---CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 40138 0.68 0.492051
Target:  5'- ---cGUC-UGGAGGGGGGCUG-GCCAu -3'
miRNA:   3'- acgcCAGcACCUCCCUCCGGCaCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.