miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 162106 0.73 0.288498
Target:  5'- cGCGGUUG-GGAaagugugcacuGGGGGGCCGUcCCAc -3'
miRNA:   3'- aCGCCAGCaCCU-----------CCCUCCGGCAcGGU- -5'
29073 5' -62.7 NC_006146.1 + 129515 0.67 0.576658
Target:  5'- cUGCGGguUCGUGGAGc--GGCCGgaUGCCc -3'
miRNA:   3'- -ACGCC--AGCACCUCccuCCGGC--ACGGu -5'
29073 5' -62.7 NC_006146.1 + 135169 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 45336 0.66 0.664046
Target:  5'- uUGCGGggauucGGGGGAGGCCGguacCCAa -3'
miRNA:   3'- -ACGCCagcac-CUCCCUCCGGCac--GGU- -5'
29073 5' -62.7 NC_006146.1 + 44308 0.7 0.413624
Target:  5'- -cCGGUaGUGGGGGcuGGGGCCGUGgCAg -3'
miRNA:   3'- acGCCAgCACCUCC--CUCCGGCACgGU- -5'
29073 5' -62.7 NC_006146.1 + 137994 0.69 0.486601
Target:  5'- gGCGGg-GUGGGGGGuGcGCCcccagccggacccugGUGCCAg -3'
miRNA:   3'- aCGCCagCACCUCCCuC-CGG---------------CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 91099 0.68 0.492051
Target:  5'- cUGCGGcagUGgcagcGGAGGGAGGUgaggGUGCCGa -3'
miRNA:   3'- -ACGCCa--GCa----CCUCCCUCCGg---CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 109275 0.68 0.519705
Target:  5'- gUGCuucaGGUCGUagcugGGAGGGAucucggccccGGCCGcgGCCGc -3'
miRNA:   3'- -ACG----CCAGCA-----CCUCCCU----------CCGGCa-CGGU- -5'
29073 5' -62.7 NC_006146.1 + 104386 1.08 0.00098
Target:  5'- uUGCGGUCGUGGAGGGAGGCCGUGCCAa -3'
miRNA:   3'- -ACGCCAGCACCUCCCUCCGGCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 93687 0.67 0.547949
Target:  5'- -uCGGUgGUGGAGgcauaguccaGGAGGCCGUGg-- -3'
miRNA:   3'- acGCCAgCACCUC----------CCUCCGGCACggu -5'
29073 5' -62.7 NC_006146.1 + 45068 0.68 0.538476
Target:  5'- gGCGGcugaggugccUCGUGGggagAGGGAGgguGCCG-GCCAu -3'
miRNA:   3'- aCGCC----------AGCACC----UCCCUC---CGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 56237 0.68 0.52906
Target:  5'- aGCGGguccgCG-GGGGcGGAGGCgGgGCCGu -3'
miRNA:   3'- aCGCCa----GCaCCUC-CCUCCGgCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 149595 0.72 0.294964
Target:  5'- gGCGG-CG-GGAGaGGAGGCUG-GCCGc -3'
miRNA:   3'- aCGCCaGCaCCUC-CCUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 166486 0.67 0.545101
Target:  5'- cGUGGUagcuagaaucgcagCGUGGugccagucGGGcGGCUGUGCCAa -3'
miRNA:   3'- aCGCCA--------------GCACCu-------CCCuCCGGCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 166017 0.71 0.350746
Target:  5'- aUGCGGUUGUGGGcaucGGGGGuGCCuGUGgCCc -3'
miRNA:   3'- -ACGCCAGCACCU----CCCUC-CGG-CAC-GGu -5'
29073 5' -62.7 NC_006146.1 + 51714 0.68 0.528121
Target:  5'- gUGuCGGUgGUGGAggacaugGGGAGGCgGcGCCc -3'
miRNA:   3'- -AC-GCCAgCACCU-------CCCUCCGgCaCGGu -5'
29073 5' -62.7 NC_006146.1 + 55028 0.67 0.547949
Target:  5'- gGCGGgCGggaUGGGGGucGGGGCCGggGCCu -3'
miRNA:   3'- aCGCCaGC---ACCUCC--CUCCGGCa-CGGu -5'
29073 5' -62.7 NC_006146.1 + 157541 0.67 0.576658
Target:  5'- gGUGGUCGcgGuGAGGGAGGagGUGgCCu -3'
miRNA:   3'- aCGCCAGCa-C-CUCCCUCCggCAC-GGu -5'
29073 5' -62.7 NC_006146.1 + 44017 0.7 0.381321
Target:  5'- cGCGG-CGgGGAGGGGgcGGCCGaggGCCc -3'
miRNA:   3'- aCGCCaGCaCCUCCCU--CCGGCa--CGGu -5'
29073 5' -62.7 NC_006146.1 + 40138 0.68 0.492051
Target:  5'- ---cGUC-UGGAGGGGGGCUG-GCCAu -3'
miRNA:   3'- acgcCAGcACCUCCCUCCGGCaCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.