miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 40282 0.66 0.664046
Target:  5'- cGCGGgc--GGAGGcgggccaaaGAGGCCGggcagGCCAa -3'
miRNA:   3'- aCGCCagcaCCUCC---------CUCCGGCa----CGGU- -5'
29073 5' -62.7 NC_006146.1 + 154035 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 150957 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 147879 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 144801 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 141723 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 124148 0.69 0.438929
Target:  5'- cGgGGUCG-GGAGGcGAGGaCCcugGCCAg -3'
miRNA:   3'- aCgCCAGCaCCUCC-CUCC-GGca-CGGU- -5'
29073 5' -62.7 NC_006146.1 + 75254 0.69 0.438072
Target:  5'- gGCGGgCGUGGggugcacGGGGAuGGCCGaggaGCCGa -3'
miRNA:   3'- aCGCCaGCACC-------UCCCU-CCGGCa---CGGU- -5'
29073 5' -62.7 NC_006146.1 + 122216 0.73 0.263748
Target:  5'- aGCGG-CGgGcGAGGGAGGCCGgcgaagcauggGCCAg -3'
miRNA:   3'- aCGCCaGCaC-CUCCCUCCGGCa----------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 157113 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 15282 0.69 0.482984
Target:  5'- aGCGGcugaaccggagCGagggGGAGGaGGGGCCGgagGCCAg -3'
miRNA:   3'- aCGCCa----------GCa---CCUCC-CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 61827 0.66 0.654337
Target:  5'- gGCGcUgGUGGGGGcaguGGGGCUgGUGCCGg -3'
miRNA:   3'- aCGCcAgCACCUCC----CUCCGG-CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 26224 0.66 0.654337
Target:  5'- --aGGUCGUGGAGaagcaccGAGGCCaaaauugGCCAg -3'
miRNA:   3'- acgCCAGCACCUCc------CUCCGGca-----CGGU- -5'
29073 5' -62.7 NC_006146.1 + 50032 0.66 0.634876
Target:  5'- cGgGGUCGaggcgcaGGAGGGAGGCgcaGU-CCAg -3'
miRNA:   3'- aCgCCAGCa------CCUCCCUCCGg--CAcGGU- -5'
29073 5' -62.7 NC_006146.1 + 70548 0.66 0.615408
Target:  5'- gGCGGUgGUGGGguauauGGGuuguGGGCauCGUGCCc -3'
miRNA:   3'- aCGCCAgCACCU------CCC----UCCG--GCACGGu -5'
29073 5' -62.7 NC_006146.1 + 14792 0.66 0.605687
Target:  5'- gGCGGcUGaggGGaAGGaGAGGCCG-GCCGg -3'
miRNA:   3'- aCGCCaGCa--CC-UCC-CUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 62913 0.67 0.586306
Target:  5'- uUGgGGUguuuucagaUGcGGAGGGugAGGCUGUGCCu -3'
miRNA:   3'- -ACgCCA---------GCaCCUCCC--UCCGGCACGGu -5'
29073 5' -62.7 NC_006146.1 + 41055 0.68 0.542258
Target:  5'- gGCGGcCcugggggccucgggGUGGAGGGAGGCCagggacagcgagggGaGCCAg -3'
miRNA:   3'- aCGCCaG--------------CACCUCCCUCCGG--------------CaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 19713 0.68 0.501196
Target:  5'- -cUGGUCcacgGGGGaGGAGGCCG-GCCGc -3'
miRNA:   3'- acGCCAGca--CCUC-CCUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 45336 0.66 0.664046
Target:  5'- uUGCGGggauucGGGGGAGGCCGguacCCAa -3'
miRNA:   3'- -ACGCCagcac-CUCCCUCCGGCac--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.