miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 5' -62.7 NC_006146.1 + 170418 0.66 0.630981
Target:  5'- gGCGGagG-GGGGGGucccgcggggcccGGCgCGUGCCGg -3'
miRNA:   3'- aCGCCagCaCCUCCCu------------CCG-GCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 169487 0.66 0.630981
Target:  5'- gGCGGagG-GGGGGGucccgcggggcccGGCgCGUGCCGg -3'
miRNA:   3'- aCGCCagCaCCUCCCu------------CCG-GCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 168555 0.66 0.630981
Target:  5'- gGCGGagG-GGGGGGucccgcggggcccGGCgCGUGCCGg -3'
miRNA:   3'- aCGCCagCaCCUCCCu------------CCG-GCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 167623 0.66 0.630981
Target:  5'- gGCGGagG-GGGGGGucccgcggggcccGGCgCGUGCCGg -3'
miRNA:   3'- aCGCCagCaCCUCCCu------------CCG-GCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 166486 0.67 0.545101
Target:  5'- cGUGGUagcuagaaucgcagCGUGGugccagucGGGcGGCUGUGCCAa -3'
miRNA:   3'- aCGCCA--------------GCACCu-------CCCuCCGGCACGGU- -5'
29073 5' -62.7 NC_006146.1 + 166017 0.71 0.350746
Target:  5'- aUGCGGUUGUGGGcaucGGGGGuGCCuGUGgCCc -3'
miRNA:   3'- -ACGCCAGCACCU----CCCUC-CGG-CAC-GGu -5'
29073 5' -62.7 NC_006146.1 + 162106 0.73 0.288498
Target:  5'- cGCGGUUG-GGAaagugugcacuGGGGGGCCGUcCCAc -3'
miRNA:   3'- aCGCCAGCaCCU-----------CCCUCCGGCAcGGU- -5'
29073 5' -62.7 NC_006146.1 + 157541 0.67 0.576658
Target:  5'- gGUGGUCGcgGuGAGGGAGGagGUGgCCu -3'
miRNA:   3'- aCGCCAGCa-C-CUCCCUCCggCAC-GGu -5'
29073 5' -62.7 NC_006146.1 + 157113 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 154035 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 150957 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 149595 0.72 0.294964
Target:  5'- gGCGG-CG-GGAGaGGAGGCUG-GCCGc -3'
miRNA:   3'- aCGCCaGCaCCUC-CCUCCGGCaCGGU- -5'
29073 5' -62.7 NC_006146.1 + 147879 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 144801 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 141723 0.69 0.447559
Target:  5'- gGgGGcCGgGGAGGGAGGCgGggaggacagGCCAg -3'
miRNA:   3'- aCgCCaGCaCCUCCCUCCGgCa--------CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137994 0.69 0.486601
Target:  5'- gGCGGg-GUGGGGGGuGcGCCcccagccggacccugGUGCCAg -3'
miRNA:   3'- aCGCCagCACCUCCCuC-CGG---------------CACGGU- -5'
29073 5' -62.7 NC_006146.1 + 137492 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137399 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137306 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5'
29073 5' -62.7 NC_006146.1 + 137213 0.67 0.576658
Target:  5'- -cCGGUCcUGGAGcucGGGGCCGgggGCCGg -3'
miRNA:   3'- acGCCAGcACCUCc--CUCCGGCa--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.