miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29074 5' -52.7 NC_006146.1 + 10238 0.66 0.982461
Target:  5'- -aUGUGCCGGcuccuGAAGGCCUCccUGa-- -3'
miRNA:   3'- ccACACGGUC-----CUUCCGGAGauACaac -5'
29074 5' -52.7 NC_006146.1 + 43854 0.66 0.976607
Target:  5'- ----cGCCAGcucGAGGGCCUCUggugacacgcgcagcGUGUUGc -3'
miRNA:   3'- ccacaCGGUC---CUUCCGGAGA---------------UACAAC- -5'
29074 5' -52.7 NC_006146.1 + 41853 0.66 0.972638
Target:  5'- cGUG-GCCAGGGgcuaccgGGGCCUC-GUGa-- -3'
miRNA:   3'- cCACaCGGUCCU-------UCCGGAGaUACaac -5'
29074 5' -52.7 NC_006146.1 + 153428 0.66 0.975593
Target:  5'- gGGUGUGgCuggcuuuGGAgGGGCCggugUUGUGUUGu -3'
miRNA:   3'- -CCACACgGu------CCU-UCCGGa---GAUACAAC- -5'
29074 5' -52.7 NC_006146.1 + 51177 0.66 0.982461
Target:  5'- uGUGgaGCCGGGGAGGCUgcucgaggaagCUGUGg-- -3'
miRNA:   3'- cCACa-CGGUCCUUCCGGa----------GAUACaac -5'
29074 5' -52.7 NC_006146.1 + 57296 0.66 0.982461
Target:  5'- cGGUcccCCAGG-AGGCCUUUGUGg-- -3'
miRNA:   3'- -CCAcacGGUCCuUCCGGAGAUACaac -5'
29074 5' -52.7 NC_006146.1 + 27209 0.67 0.960087
Target:  5'- aGGaccgGUGCCAGGAcacGGGCUUCcugAUGc-- -3'
miRNA:   3'- -CCa---CACGGUCCU---UCCGGAGa--UACaac -5'
29074 5' -52.7 NC_006146.1 + 36259 0.67 0.970035
Target:  5'- gGGaUGUuagaaGCCAGcGAAGGCCUUgAUGcUUGg -3'
miRNA:   3'- -CC-ACA-----CGGUC-CUUCCGGAGaUAC-AAC- -5'
29074 5' -52.7 NC_006146.1 + 116830 0.68 0.942187
Target:  5'- cGUGUGCCGGGAcgcggcggccagguGGGCC-CUGa---- -3'
miRNA:   3'- cCACACGGUCCU--------------UCCGGaGAUacaac -5'
29074 5' -52.7 NC_006146.1 + 145283 0.7 0.885106
Target:  5'- ----aGCUgAGGggGGCCUCguagGUGUUGu -3'
miRNA:   3'- ccacaCGG-UCCuuCCGGAGa---UACAAC- -5'
29074 5' -52.7 NC_006146.1 + 157905 0.7 0.892053
Target:  5'- uGGUGU-CCGGGAagaGGGUCUUgugguagGUGUUGa -3'
miRNA:   3'- -CCACAcGGUCCU---UCCGGAGa------UACAAC- -5'
29074 5' -52.7 NC_006146.1 + 139692 0.71 0.830247
Target:  5'- aGUGUGCCAGGcuugugguuAAGGucCCUCUGUGc-- -3'
miRNA:   3'- cCACACGGUCC---------UUCC--GGAGAUACaac -5'
29074 5' -52.7 NC_006146.1 + 55559 0.74 0.6651
Target:  5'- ----gGCCAGGAAGGCCUCgAUGa-- -3'
miRNA:   3'- ccacaCGGUCCUUCCGGAGaUACaac -5'
29074 5' -52.7 NC_006146.1 + 88273 0.74 0.716617
Target:  5'- cGUGUGCUGGGucGGGCCUCUggGg-- -3'
miRNA:   3'- cCACACGGUCCu-UCCGGAGAuaCaac -5'
29074 5' -52.7 NC_006146.1 + 105764 1.06 0.010007
Target:  5'- aGGUGUGCCAGGAAGGCCUCUAUGUg- -3'
miRNA:   3'- -CCACACGGUCCUUCCGGAGAUACAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.