Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29074 | 5' | -52.7 | NC_006146.1 | + | 105764 | 1.06 | 0.010007 |
Target: 5'- aGGUGUGCCAGGAAGGCCUCUAUGUg- -3' miRNA: 3'- -CCACACGGUCCUUCCGGAGAUACAac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 55559 | 0.74 | 0.6651 |
Target: 5'- ----gGCCAGGAAGGCCUCgAUGa-- -3' miRNA: 3'- ccacaCGGUCCUUCCGGAGaUACaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 88273 | 0.74 | 0.716617 |
Target: 5'- cGUGUGCUGGGucGGGCCUCUggGg-- -3' miRNA: 3'- cCACACGGUCCu-UCCGGAGAuaCaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 139692 | 0.71 | 0.830247 |
Target: 5'- aGUGUGCCAGGcuugugguuAAGGucCCUCUGUGc-- -3' miRNA: 3'- cCACACGGUCC---------UUCC--GGAGAUACaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 145283 | 0.7 | 0.885106 |
Target: 5'- ----aGCUgAGGggGGCCUCguagGUGUUGu -3' miRNA: 3'- ccacaCGG-UCCuuCCGGAGa---UACAAC- -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 157905 | 0.7 | 0.892053 |
Target: 5'- uGGUGU-CCGGGAagaGGGUCUUgugguagGUGUUGa -3' miRNA: 3'- -CCACAcGGUCCU---UCCGGAGa------UACAAC- -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 116830 | 0.68 | 0.942187 |
Target: 5'- cGUGUGCCGGGAcgcggcggccagguGGGCC-CUGa---- -3' miRNA: 3'- cCACACGGUCCU--------------UCCGGaGAUacaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 27209 | 0.67 | 0.960087 |
Target: 5'- aGGaccgGUGCCAGGAcacGGGCUUCcugAUGc-- -3' miRNA: 3'- -CCa---CACGGUCCU---UCCGGAGa--UACaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 36259 | 0.67 | 0.970035 |
Target: 5'- gGGaUGUuagaaGCCAGcGAAGGCCUUgAUGcUUGg -3' miRNA: 3'- -CC-ACA-----CGGUC-CUUCCGGAGaUAC-AAC- -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 41853 | 0.66 | 0.972638 |
Target: 5'- cGUG-GCCAGGGgcuaccgGGGCCUC-GUGa-- -3' miRNA: 3'- cCACaCGGUCCU-------UCCGGAGaUACaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 153428 | 0.66 | 0.975593 |
Target: 5'- gGGUGUGgCuggcuuuGGAgGGGCCggugUUGUGUUGu -3' miRNA: 3'- -CCACACgGu------CCU-UCCGGa---GAUACAAC- -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 43854 | 0.66 | 0.976607 |
Target: 5'- ----cGCCAGcucGAGGGCCUCUggugacacgcgcagcGUGUUGc -3' miRNA: 3'- ccacaCGGUC---CUUCCGGAGA---------------UACAAC- -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 10238 | 0.66 | 0.982461 |
Target: 5'- -aUGUGCCGGcuccuGAAGGCCUCccUGa-- -3' miRNA: 3'- ccACACGGUC-----CUUCCGGAGauACaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 51177 | 0.66 | 0.982461 |
Target: 5'- uGUGgaGCCGGGGAGGCUgcucgaggaagCUGUGg-- -3' miRNA: 3'- cCACa-CGGUCCUUCCGGa----------GAUACaac -5' |
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29074 | 5' | -52.7 | NC_006146.1 | + | 57296 | 0.66 | 0.982461 |
Target: 5'- cGGUcccCCAGG-AGGCCUUUGUGg-- -3' miRNA: 3'- -CCAcacGGUCCuUCCGGAGAUACaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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