miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 122245 0.67 0.908412
Target:  5'- uGGGCCAGgauUCagaAGGCGCUgggcacccGCCCGg-- -3'
miRNA:   3'- -CCCGGUCa--AGg--UCUGUGA--------CGGGUaug -5'
29077 3' -55 NC_006146.1 + 158316 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 95810 0.67 0.908412
Target:  5'- --cCCGGUUCCAGAUccuguACUGgCCCcgGCu -3'
miRNA:   3'- cccGGUCAAGGUCUG-----UGAC-GGGuaUG- -5'
29077 3' -55 NC_006146.1 + 146003 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 142925 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 61866 0.67 0.902165
Target:  5'- gGGGCagaGGUUCCacggGGGCGC-GCCCucggGUACc -3'
miRNA:   3'- -CCCGg--UCAAGG----UCUGUGaCGGG----UAUG- -5'
29077 3' -55 NC_006146.1 + 18505 0.67 0.902165
Target:  5'- uGGGCCAGggCCAGGggcaaaacauUACU-CCCAUc- -3'
miRNA:   3'- -CCCGGUCaaGGUCU----------GUGAcGGGUAug -5'
29077 3' -55 NC_006146.1 + 55041 0.67 0.902165
Target:  5'- gGGGUCGGggCCgGGGC-CUGCCaCAgGCg -3'
miRNA:   3'- -CCCGGUCaaGG-UCUGuGACGG-GUaUG- -5'
29077 3' -55 NC_006146.1 + 66184 0.67 0.902165
Target:  5'- aGGGCCAGacgCAGGaGCUGaCCCAgGCg -3'
miRNA:   3'- -CCCGGUCaagGUCUgUGAC-GGGUaUG- -5'
29077 3' -55 NC_006146.1 + 125177 0.67 0.902165
Target:  5'- uGGGCCAGgucagggUCguGGCcccGCUGCUC-UACu -3'
miRNA:   3'- -CCCGGUCa------AGguCUG---UGACGGGuAUG- -5'
29077 3' -55 NC_006146.1 + 129678 0.67 0.902165
Target:  5'- aGGGCCGGUcucUUCAG-CGCcGCCUcgAUa -3'
miRNA:   3'- -CCCGGUCA---AGGUCuGUGaCGGGuaUG- -5'
29077 3' -55 NC_006146.1 + 85722 0.67 0.895683
Target:  5'- cGGCCAuGUcaggCguGACACUGUCCGUu- -3'
miRNA:   3'- cCCGGU-CAa---GguCUGUGACGGGUAug -5'
29077 3' -55 NC_006146.1 + 137912 0.68 0.888967
Target:  5'- aGGGCCgggGGUUCCGGGgGCaGCCgCGa-- -3'
miRNA:   3'- -CCCGG---UCAAGGUCUgUGaCGG-GUaug -5'
29077 3' -55 NC_006146.1 + 32023 0.68 0.882022
Target:  5'- gGGGCCucGGgaCgAGGCGCUGgCCCAg-- -3'
miRNA:   3'- -CCCGG--UCaaGgUCUGUGAC-GGGUaug -5'
29077 3' -55 NC_006146.1 + 111649 0.68 0.882022
Target:  5'- cGGCCAGgcCCuGaACACccagGCCCAUGg -3'
miRNA:   3'- cCCGGUCaaGGuC-UGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 67782 0.68 0.87558
Target:  5'- cGGCCAGggacgugacggcggCCAGGCuCUGCCCc--- -3'
miRNA:   3'- cCCGGUCaa------------GGUCUGuGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 113596 0.68 0.874853
Target:  5'- aGGCCGGgucgCCAGucucuccgucGC-CUGCCCcgGCg -3'
miRNA:   3'- cCCGGUCaa--GGUC----------UGuGACGGGuaUG- -5'
29077 3' -55 NC_006146.1 + 24226 0.68 0.867464
Target:  5'- gGGGCCGGggCCGccCACcGCCCGg-- -3'
miRNA:   3'- -CCCGGUCaaGGUcuGUGaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 43519 0.68 0.867464
Target:  5'- cGGGCCAGgcugCCGGcCACcaucaguggggUGUCCGUGg -3'
miRNA:   3'- -CCCGGUCaa--GGUCuGUG-----------ACGGGUAUg -5'
29077 3' -55 NC_006146.1 + 137365 0.68 0.859861
Target:  5'- aGGGCCAGgcaagCCGGGCACaaCCUAg-- -3'
miRNA:   3'- -CCCGGUCaa---GGUCUGUGacGGGUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.