miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 25040 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 15807 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 28118 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 33039 0.66 0.931
Target:  5'- cGGGgCGGggCCcgGGACAC-GCCCAc-- -3'
miRNA:   3'- -CCCgGUCaaGG--UCUGUGaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 71195 0.66 0.931
Target:  5'- uGGGCCAGUagaagUCCAG-CGggGCCguagCGUGCu -3'
miRNA:   3'- -CCCGGUCA-----AGGUCuGUgaCGG----GUAUG- -5'
29077 3' -55 NC_006146.1 + 12728 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 21962 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 18885 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 92862 0.66 0.930483
Target:  5'- uGGCaCGGUcugacuuUCCAGugGCUGUgCAUGu -3'
miRNA:   3'- cCCG-GUCA-------AGGUCugUGACGgGUAUg -5'
29077 3' -55 NC_006146.1 + 69254 0.66 0.927859
Target:  5'- aGGGCCAGgUCCGGguccuccucgaagauGCAgCUGgCCCAc-- -3'
miRNA:   3'- -CCCGGUCaAGGUC---------------UGU-GAC-GGGUaug -5'
29077 3' -55 NC_006146.1 + 45456 0.66 0.925716
Target:  5'- aGGUCAGg--CAGAUugUGCCgGUAUg -3'
miRNA:   3'- cCCGGUCaagGUCUGugACGGgUAUG- -5'
29077 3' -55 NC_006146.1 + 95878 0.66 0.925716
Target:  5'- uGGCCccGGUUCCAGAUccuguACUGgCCCcgGu -3'
miRNA:   3'- cCCGG--UCAAGGUCUG-----UGAC-GGGuaUg -5'
29077 3' -55 NC_006146.1 + 33365 0.66 0.925716
Target:  5'- -cGCCGGUggguccgCCGGGcCGCUGCCCc--- -3'
miRNA:   3'- ccCGGUCAa------GGUCU-GUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 56286 0.67 0.914421
Target:  5'- aGGCCAGgacgUCCAG-CGCcGCCUcgAg -3'
miRNA:   3'- cCCGGUCa---AGGUCuGUGaCGGGuaUg -5'
29077 3' -55 NC_006146.1 + 49723 0.67 0.914421
Target:  5'- cGGGCCAGgagcugguugauUUCUcguuucagGGGCGCgcgGCCCAgGCc -3'
miRNA:   3'- -CCCGGUC------------AAGG--------UCUGUGa--CGGGUaUG- -5'
29077 3' -55 NC_006146.1 + 142925 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 146003 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 122245 0.67 0.908412
Target:  5'- uGGGCCAGgauUCagaAGGCGCUgggcacccGCCCGg-- -3'
miRNA:   3'- -CCCGGUCa--AGg--UCUGUGA--------CGGGUaug -5'
29077 3' -55 NC_006146.1 + 152159 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 95810 0.67 0.908412
Target:  5'- --cCCGGUUCCAGAUccuguACUGgCCCcgGCu -3'
miRNA:   3'- cccGGUCAAGGUCUG-----UGAC-GGGuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.